Alligator_sinensis_CCG017904.1 (Alligator sinensis)
RFX

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF02257 (RFX_DNA_binding) IPR003150 Alligator_sinensis_CCG017904.1 T318952_2.00 GigaDB (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
RFX1
M02447_2.00 		Anolis carolinensis
GTHRCYANGN
NCNTRGYDAC		 PBM
Weirauch et al.(2014)
pTH9223 		0.781 1.000
RFX1
M02451_2.00 		Tetraodon nigroviridis
GTHDYYANGN
NCNTRRHDAC		 PBM
Weirauch et al.(2014)
pTH9385 		0.781 1.000
RFX1
M05723_2.00 		Homo sapiens
BGTTRYCATGRYAACV
BGTTRYCATGRYAACV		 SELEX
Yin et al.(2017)
RFX1_eDBD_HT-SELEX 		0.781 1.000
Rfx1
M08162_2.00 		Mus musculus
GTTGCYADGGNRAC
GTYNCCHTRGCAAC		 ChIP-seq
Mathelier et al.(2014)
MA0509.1 		0.781 1.000
RFX1
M09363_2.00 		Homo sapiens
BBBSSNGTTGCCADGGNRMCVV
BBGKYNCCHTGGCAACNSSVVV		 Misc
Kulakovskiy et al.(2013)
RFX1_HUMAN.H11MO.0.B 		0.781 1.000
Rfx1
M09367_2.00 		Mus musculus
BBBSSNGTTGCCADGGNRMCVV
BBGKYNCCHTGGCAACNSSVVV		 Misc
Kulakovskiy et al.(2013)
RFX1_MOUSE.H11MO.0.A 		0.781 1.000
RFX1
M11245_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$EFC_Q6 		0.781 1.000
RFX1
M11246_2.00 		Homo sapiens
HNGTTRCYWVGYDMYNN
NNRKHRCBWRGYAACND		 Transfac
Matys et al.(2006)
V$RFX1_01 		0.781 1.000
RFX1
M11247_2.00 		Homo sapiens
HNGTTRCYWBVGYDMYNN
NNRKHRCBVWRGYAACND		 Transfac
Matys et al.(2006)
V$RFX1_02 		0.781 1.000
RFX1
M11248_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$RFX1_Q6 		0.781 1.000
RFX1
M05724_2.00 		Homo sapiens
BGTWRYCATGRYWACV
BGTWRYCATGRYWACV		 SELEX
Yin et al.(2017)
RFX1_eDBD_Methyl-HT-SELEX 		0.781 1.000
G4VLF2_SCHMA
M02452_2.00 		Schistosoma mansoni
GTTGCTAD
HTAGCAAC		 PBM
Weirauch et al.(2014)
pTH8587 		0.775 0.861
Rfx3
M00188_2.00 		Mus musculus
SNTRRHDACN
NGTHDYYANS		 PBM
Badis et al.(2009)
Rfx3_3961 		0.775 0.886
Rfx3
M03463_2.00 		Mus musculus
SGTTRCCATGGYAACS
SGTTRCCATGGYAACS		 SELEX
Jolma et al.(2013)
Rfx3_1 		0.775 0.886
Rfx3
M09368_2.00 		Mus musculus
BBGTTGCCATGGNRAC
GTYNCCATGGCAACVV		 Misc
Kulakovskiy et al.(2013)
RFX3_MOUSE.H11MO.0.C 		0.775 0.886
Sjc_0102030
M02455_2.00 		Schistosoma japonicum
GTTRCYANG
CNTRGYAAC		 PBM
Weirauch et al.(2014)
pTH9285 		0.773 0.848
RFX2
M02449_2.00 		Homo sapiens
BGTHRYYADG
CHTRRYDACV		 PBM
Weirauch et al.(2014)
pTH9194 		0.772 0.886
RFX2
M02450_2.00 		Ornithorhynchus anatinus
NGTHRYYANV
BNTRRYDACN		 PBM
Weirauch et al.(2014)
pTH9269 		0.772 0.886
GB41876
M02453_2.00 		Apis mellifera
GTHDCYANVN
NBNTRGHDAC		 PBM
Weirauch et al.(2014)
pTH9226 		0.771 0.835
XP_002157607.1
M02456_2.00 		Hydra magnipapillata
GTHDYYDNVN
NBNHRRHDAC		 PBM
Weirauch et al.(2014)
pTH9199 		0.770 0.797
Rfx
M03959_2.00 		Drosophila melanogaster
NGTHRCYATRGYDACN
NGTHRCYATRGYDACN		 SELEX
Nitta et al.(2015)
Rfx_1 		0.762 0.810
Rfx
M03960_2.00 		Drosophila melanogaster
GTTGCTARGCAAC
GTTGCYTAGCAAC		 SELEX
Nitta et al.(2015)
Rfx_2 		0.762 0.810
Rfx
M03961_2.00 		Drosophila melanogaster
BGTWRCCATGGYWACV
BGTWRCCATGGYWACV		 SELEX
Nitta et al.(2015)
Rfx_3 		0.762 0.810
Rfx
M03962_2.00 		Drosophila melanogaster
GTTRCYAWTRGYAAC
GTTRCYAWTRGYAAC		 SELEX
Nitta et al.(2015)
Rfx_4 		0.762 0.810
Rfx
M03963_2.00 		Drosophila melanogaster
GTTGCTARGCAAC
GTTGCYTAGCAAC		 SELEX
Nitta et al.(2015)
Rfx_5 		0.762 0.810
RFX3
M03452_2.00 		Homo sapiens
NGTTRCCATGGHAACV
BGTTDCCATGGYAACN		 SELEX
Jolma et al.(2013)
RFX3_1 		0.762 0.835
RFX3
M03453_2.00 		Homo sapiens
BGTTGCTARGCAACS
SGTTGCYTAGCAACV		 SELEX
Jolma et al.(2013)
RFX3_2 		0.762 0.835
RFX3
M02750_2.00 		Homo sapiens
GTTRYYATGG
CCATRRYAAC		 SELEX
Jolma et al.(2010)
RFX3_dimer 		0.762 0.835
RFX3
M05715_2.00 		Homo sapiens
NGTTRYYATRRYAACN
NGTTRYYATRRYAACN		 SELEX
Yin et al.(2017)
RFX3_eDBD_HT-SELEX_1 		0.762 0.835
RFX3
M05716_2.00 		Homo sapiens
BGTTGCTARGCAACS
SGTTGCYTAGCAACV		 SELEX
Yin et al.(2017)
RFX3_eDBD_HT-SELEX_2 		0.762 0.835
RFX3
M09361_2.00 		Homo sapiens
BGTTRCCATGGYRN
NYRCCATGGYAACV		 Misc
Kulakovskiy et al.(2013)
RFX3_HUMAN.H11MO.0.B 		0.762 0.835
RFX3
M09627_2.00 		Homo sapiens
BNGTTGCCATGGCAAC
GTTGCCATGGCAACNV		 Misc
Heinz et al.(2010)
K562-RFX3_SRA012198 		0.762 0.835
RFX3
M05717_2.00 		Homo sapiens
BGTTRYYATRRYAACV
BGTTRYYATRRYAACV		 SELEX
Yin et al.(2017)
RFX3_eDBD_Methyl-HT-SELEX_1 		0.762 0.835
RFX3
M05718_2.00 		Homo sapiens
BGTTGCTARGCAACV
BGTTGCYTAGCAACV		 SELEX
Yin et al.(2017)
RFX3_eDBD_Methyl-HT-SELEX_2 		0.762 0.835
Rfx2
M03461_2.00 		Mus musculus
BGTTRCCATGGYAACV
BGTTRCCATGGYAACV		 SELEX
Jolma et al.(2013)
Rfx2_1 		0.761 0.848
Rfx2
M03462_2.00 		Mus musculus
SGTTGCTARGCAACV
BGTTGCYTAGCAACS		 SELEX
Jolma et al.(2013)
Rfx2_2 		0.761 0.848
Rfx2
M05888_2.00 		Mus musculus
NGTTRCYATGGHDAY
RTHDCCATRGYAACN		 SMiLE-seq
Isakova et al.(2017)
RFX2 		0.761 0.848
Rfx2
M09366_2.00 		Mus musculus
NBYBGTYNCCMTGGCAACNSSS
SSSNGTTGCCAKGGNRACVRVN		 Misc
Kulakovskiy et al.(2013)
RFX2_MOUSE.H11MO.0.A 		0.761 0.848
RFX2
M03454_2.00 		Homo sapiens
BGTTRCCATGGYAACV
BGTTRCCATGGYAACV		 SELEX
Jolma et al.(2013)
RFX2_1 		0.759 0.835
RFX2
M03455_2.00 		Homo sapiens
SGTTGCTARGCAACS
SGTTGCYTAGCAACS		 SELEX
Jolma et al.(2013)
RFX2_2 		0.759 0.835
RFX2
M05719_2.00 		Homo sapiens
NGTWDYYATRRHWACN
NGTWDYYATRRHWACN		 SELEX
Yin et al.(2017)
RFX2_eDBD_HT-SELEX 		0.759 0.835
RFX2
M09362_2.00 		Homo sapiens
YNGTTGCCATGGVRACVV
BBGTYBCCATGGCAACNR		 Misc
Kulakovskiy et al.(2013)
RFX2_HUMAN.H11MO.0.A 		0.759 0.835
RFX2
M09628_2.00 		Homo sapiens
BGTTKCCATGGMAAC
GTTKCCATGGMAACV		 Misc
Heinz et al.(2010)
LoVo-RFX2_GSE49402 		0.759 0.835
RFX2
M05720_2.00 		Homo sapiens
BGTTRCCATGRYAACV
BGTTRYCATGGYAACV		 SELEX
Yin et al.(2017)
RFX2_eDBD_Methyl-HT-SELEX 		0.759 0.835
PHUM046580
M02454_2.00 		Pediculus humanus
NGTHDCYANV
BNTRGHDACN		 PBM
Weirauch et al.(2014)
pTH9278 		0.757 0.848
daf-19
M00709_2.00 		Caenorhabditis elegans
SGTTRCTADG
CHTAGYAACS		 PBM
Narasimhan et al.(2015)
pTH10021 		0.743 0.709
RFX4
M02448_2.00 		Cavia porcellus
GTHDYYNNGN
NCNNRRHDAC		 PBM
Weirauch et al.(2014)
pTH9249 		0.712 0.646
Rfx4
M00186_2.00 		Mus musculus
GTHDYYNNSN
NSNNRRHDAC		 PBM
Badis et al.(2009)
Rfx4_3761 		0.712 0.646
RFX4
M03456_2.00 		Homo sapiens
NGTWRYCATRGHWACN
NGTWDCYATGRYWACN		 SELEX
Jolma et al.(2013)
RFX4_1 		0.712 0.646
RFX4
M03457_2.00 		Homo sapiens
NGTTGCYRRGCAACS
SGTTGCYYRGCAACN		 SELEX
Jolma et al.(2013)
RFX4_2 		0.712 0.646
RFX4
M05721_2.00 		Homo sapiens
BGTWRYCATGRYWACV
BGTWRYCATGRYWACV		 SELEX
Yin et al.(2017)
RFX4_eDBD_HT-SELEX 		0.712 0.646
RFX4
M05722_2.00 		Homo sapiens
BGTWRYCATGRYWACV
BGTWRYCATGRYWACV		 SELEX
Yin et al.(2017)
RFX4_eDBD_Methyl-HT-SELEX 		0.712 0.646
Rfx6
M09365_2.00 		Mus musculus
BDGTWKCYNDG
CHNRGMAACHV		 Misc
Kulakovskiy et al.(2013)
RFX6_MOUSE.H11MO.0.C 		0.691 0.620
RFX1
M00066_2.00 		Saccharomyces cerevisiae
NSGTTGCYAN
NTRGCAACSN		 PBM
Badis et al.(2008)
RFX1_4537 		0.652 0.418
RFX1
M07494_2.00 		Saccharomyces cerevisiae
BGTTRCYA
TRGYAACV		 PBM, CSA and or DIP-chip
Mathelier et al.(2014)
MA0365.1 		0.652 0.418
RFX1
M08600_2.00 		Saccharomyces cerevisiae
CGTYRBYAYRGYWACM
KGTWRCYRTRVYRACG		 Misc
DeBoer et al.(2011)
YLR176C_1478 		0.652 0.418
RFX1
M08601_2.00 		Saccharomyces cerevisiae
BGTTRCYA
TRGYAACV		 Misc
DeBoer et al.(2011)
YLR176C_496 		0.652 0.418
RFX1
M11251_2.00 		Saccharomyces cerevisiae Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
F$RFX1_02 		0.652 0.418
For this family, TFs with SR scores > 0.650 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Alligator_sinensis_CCG017904.1 RFX 419 497

Links

Other RFX family TFs
Other Alligator sinensis TFs

729 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
A1O3_09941 Capronia epimyces A1O3_09941 I
A1O5_05402 Cladophialophora psammophila A1O5_05402 I
A1O7_06547 Cladophialophora yegresii A1O7_06547 I
A1O9_10759 Exophiala aquamarina A1O9_10759 I
AAE_estExt_fgenesh1_pg.C_chr_120283 Mycosphaerella graminicola AAE_estExt_fgenesh1_pg.C_chr_120283 I
AB03945.1 Alternaria brassicicola AB03945.1 I
ACRE_066120 Acremonium chrysogenum ACRE_066120 I
AOL_s00110g91 Arthrobotrys oligospora AOL_s00110g91 I
ARB_00172 Arthroderma benhamiae ARB_00172 I
AUEXF2481DRAFT_24650 Aureobasidium subglaciale AUEXF2481DRAFT_24650 I
BAUCODRAFT_130739 Baudoinia compniacensis BAUCODRAFT_130739 I
BBA_06961 Beauveria bassiana BBA_06961 I
Bcin01g08230 Botrytis cinerea Bcin01g08230 I
BDDG_08511 Blastomyces dermatitidis BDDG_08511 I
BGHDH14_bgh02089 Blumeria graminis BGHDH14_bgh02089 I
ACLA_027670 Aspergillus clavatus CADACLAG00001684 I
CADAFLAG00009850 Aspergillus flavus CADAFLAG00009850 I
AFUA_1G06900 Aspergillus fumigatus CADAFUAG00008684 I
CADANGAG00014230 Aspergillus niger CADANGAG00014230 I
ANIA_05726 Aspergillus nidulans CADANIAG00003336 I
CADAORAG00000448 Aspergillus oryzae CADAORAG00000448 I
ATEG_02928 Aspergillus terreus CADATEAG00010284 I
NFIA_017790 Neosartorya fischeri CADNFIAG00001566 I
CCM_06653 Cordyceps militaris CCM_06653 I
CFIO01_13401 Colletotrichum fioriniae CFIO01_13401 I
CGGC5_2430 Colletotrichum gloeosporioides CGGC5_2430 I
CHGG_05033 Chaetomium globosum CHGG_05033 I
CIMG_04025 Coccidioides immitis CIMG_04025 I
CMQ_7368 Grosmannia clavigera CMQ_7368 I
Cob_01618 Colletotrichum orbiculare Cob_01618 I
COCC4DRAFT_144568 Bipolaris maydis COCC4DRAFT_144568 I
COCCADRAFT_108895 Bipolaris zeicola COCCADRAFT_108895 I
COCMIDRAFT_82997 Bipolaris oryzae COCMIDRAFT_82997 I
COCSADRAFT_249666 Bipolaris sorokiniana COCSADRAFT_249666 I
COCVIDRAFT_98457 Bipolaris victoriae COCVIDRAFT_98457 I
CPC735_003570 Coccidioides posadasii CPC735_003570 I
CPUR_01775 Claviceps purpurea CPUR_01775 I
CSUB01_01407 Colletotrichum sublineola CSUB01_01407 I
CTHT_0031440 Chaetomium thermophilum CTHT_0031440 I
DOTSEDRAFT_152208 Dothistroma septosporum DOTSEDRAFT_152208 I
DRE_04887 Drechslerella stenobrocha DRE_04887 I
EPUS_01490 Endocarpon pusillum EPUS_01490 I
estExt_fgenesh1_pg.C_30488 Cryphonectria parasitica estExt_fgenesh1_pg.C_30488 I
estExt_Genewise1Plus.C_130195 Cochliobolus heterostrophus C5 estExt_Genewise1Plus.C_130195 I
estExt_Genewise1Plus.C_sca_1_chr1_3_00050 Nectria haematococca estExt_Genewise1Plus.C_sca_1_chr1_3_00050 I
EURHEDRAFT_446038 Aspergillus ruber EURHEDRAFT_446038 I
F503_02827 Ophiostoma piceae uamh F503_02827 I
FFUJ_01538 Fusarium fujikuroi FFUJ_01538 I
fgenesh1_pm.00129_#_72 Aspergillus carbonarius fgenesh1_pm.00129_#_72 I
FGRRES_01341 Fusarium graminearum FGRRES_01341 I
FOXG_00040 Fusarium oxysporum FOXG_00040 I
FPSE_03379 Fusarium pseudograminearum FPSE_03379 I
FVEG_01476 Fusarium verticillioides FVEG_01476 I
G647_05990 Cladophialophora carrionii G647_05990 I
GGTG_09945 Gaeumannomyces graminis GGTG_09945 I
GLRG_03936 Colletotrichum graminicola GLRG_03936 I
GMDG_07025 Pseudogymnoascus destructans GMDG_07025 I
GSTUM_00003205001 Tuber melanosporum GSTUM_00003205001 I
H072_3701 Dactylellina haptotyla H072_3701 I
H101_05158 Trichophyton interdigitale H101_05158 I
H102_01127 Trichophyton rubrum H102_01127 I
H105_01140 Trichophyton soudanense H105_01140 I
HCBG_02406 Histoplasma capsulatum HCBG_02406 I
HMPREF1120_03777 Exophiala dermatitidis HMPREF1120_03777 I
HMPREF1541_01496 Cyphellophora europaea HMPREF1541_01496 I
HMPREF1624_02702 Sporothrix schenckii HMPREF1624_02702 I
LEMA_P046340.1 Leptosphaeria maculans LEMA_P046340.1 I
M437DRAFT_48815 Aureobasidium melanogenum M437DRAFT_48815 I
M438DRAFT_134375 Aureobasidium pullulans M438DRAFT_134375 I
MAC_04600 Metarhizium acridum MAC_04600 I
MAJ_04587 Metarhizium majus MAJ_04587 I
MAM_03690 Metarhizium album MAM_03690 I
MANI_013553 Metarhizium anisopliae MANI_013553 I
MAPG_02863 Magnaporthe poae MAPG_02863 I
MBM_06247 Marssonina brunnea MBM_06247 I
MBR_06001 Metarhizium brunneum MBR_06001 I
MCYG_01140 Microsporum canis MCYG_01140 I
MCYG_01140 Arthroderma otae MCYG_01140 I
MGG_05133 Magnaporthe oryzae MGG_05133 I
MGU_06476 Metarhizium guizhouense MGU_06476 I
MGYG_01691 Microsporum gypseum MGYG_01691 I
MPH_00854 Macrophomina phaseolina MPH_00854 I
Mycgr3G50313 Zymoseptoria tritici Mycgr3G50313 N
MYCTH_59287 Myceliophthora thermophila MYCTH_59287 I
NechaG65383 Fusarium solani NechaG65383 I
OCS_06574 Ophiocordyceps sinensis OCS_06574 I
OIDMADRAFT_26712 Oidiodendron maius OIDMADRAFT_26712 I
PAAG_07831 Paracoccidioides sp lutzii PAAG_07831 I
PABG_07760 Paracoccidioides brasiliensis PABG_07760 I
Pc13g03120 Penicillium chrysogenum Pc13g03120 I
PCH_Pc13g03120 Penicillium rubens PCH_Pc13g03120 I
PDE_02584 Penicillium oxalicum PDE_02584 I
PDIP_68900 Penicillium digitatum PDIP_68900 I
PEX1_101950 Penicillium expansum PEX1_101950 I
PFICI_00980 Pestalotiopsis fici PFICI_00980 I
PITC_089390 Penicillium italicum PITC_089390 I
PMAA_026570 Talaromyces marneffei PMAA_026570 I
PMAA_026570 Penicillium marneffei PMAA_026570 I
PODANS_3_1720 Podospora anserina PODANS_3_1720 I
PTRG_04116 Pyrenophora triticirepentis PTRG_04116 I
PTT_19703 Pyrenophora teres PTT_19703 I
PV04_06949 Capronia semiimmersa PV04_06949 I
PV05_08266 Exophiala xenobiotica PV05_08266 I
PV06_01972 Exophiala oligosperma PV06_01972 I
PV07_03056 Cladophialophora immunda PV07_03056 I
PV08_02892 Exophiala spinifera PV08_02892 I
PV09_03810 Verruconis gallopava PV09_03810 I
PV10_08344 Exophiala mesophila PV10_08344 I
PV11_06352 Exophiala sideris PV11_06352 I
PVAR5_1858 Byssochlamys spectabilis PVAR5_1858 I
S40285_06160 Stachybotrys chlorohalonata S40285_06160 I
S40288_04088 Stachybotrys chartarum S40288_04088 I
SAPIO_CDS3076 Scedosporium apiospermum SAPIO_CDS3076 I
SBOR_1289 Sclerotinia borealis SBOR_1289 I
SEPMUDRAFT_152049 Sphaerulina musiva SEPMUDRAFT_152049 I
SETTUDRAFT_132094 Setosphaeria turcica SETTUDRAFT_132094 I
SNOG_05002 Stagonospora nodorum SNOG_05002 I
SNOG_05002 Phaeosphaeria nodorum SNOG_05002 I
SPBR_02428 Sporothrix brasiliensis SPBR_02428 I
SS1G_04676 Sclerotinia sclerotiorum SS1G_04676 I
TEQG_02078 Trichophyton equinum TEQG_02078 I
TESG_07609 Trichophyton tonsurans TESG_07609 I
THITE_2116088 Thielavia terrestris THITE_2116088 I
TRIATDRAFT_173231 Trichoderma atroviride TRIATDRAFT_173231 I
TRIREDRAFT_36391 Trichoderma reesei TRIREDRAFT_36391 I
TRIVIDRAFT_232155 Trichoderma virens TRIVIDRAFT_232155 I
TRV_07311 Trichophyton verrucosum TRV_07311 I
TSTA_072300 Talaromyces stipitatus TSTA_072300 I
U727_0043368031 Penicillium solitum U727_0043368031 I
UCREL1_10204 Eutypa lata UCREL1_10204 I
UCRNP2_5327 Neofusicoccum parvum UCRNP2_5327 I
UREG_01940 Uncinocarpus reesii UREG_01940 I
UV8b_2987 Ustilaginoidea virens UV8b_2987 I
V499_02401 Pseudogymnoascus pannorum V499_02401 I
VDAG_03208 Verticillium dahliae VDAG_03208 I
VDBG_06048 Verticillium albo atrum VDBG_06048 I
VDBG_06048 Verticillium alfalfae VDBG_06048 I
VHEMI08976 Torrubiella hemipterigena VHEMI08976 I
W97_08085 Coniosporium apollinis W97_08085 I
W97_09244 Coniosporium apollinis W97_09244 I
X797_005757 Metarhizium robertsii X797_005757 I
Z517_05592 Fonsecaea pedrosoi Z517_05592 I
Z518_05937 Rhinocladiella mackenziei Z518_05937 I
Z519_08276 Cladophialophora bantiana Z519_08276 I