Hsal_12778--XP_001120516.1_APIME (Harpegnathos saltator)
RFX

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF02257 (RFX_DNA_binding) IPR003150 Hsal_12778--XP_001120516.1_APIME T318997_2.00 GigaDB (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Rfx7
M00823_2.00 		Mus musculus
GTYRCYRNSB
VSNYRGYRAC		 PBM
Weirauch et al.(2013)
pTH3516 		0.699 0.570
Rfx7
M00187_2.00 		Mus musculus
BGTHDYYRNN
NNYRRHDACV		 PBM
Badis et al.(2009)
Rfxdc2_3516 		0.699 0.570
RFX7
M05729_2.00 		Homo sapiens
BGTTRCYRY
RYRGYAACV		 SELEX
Yin et al.(2017)
RFX7_eDBD_HT-SELEX 		0.699 0.570
RFX7
M05730_2.00 		Homo sapiens
BGTTGCYRB
VYRGCAACV		 SELEX
Yin et al.(2017)
RFX7_eDBD_Methyl-HT-SELEX 		0.699 0.570
RFX5
M03458_2.00 		Homo sapiens
BGTTRCYATRGYAACV
BGTTRCYATRGYAACV		 SELEX
Jolma et al.(2013)
RFX5_1 		0.683 0.481
RFX5
M03459_2.00 		Homo sapiens
BGTTGCYATGGYAACV
BGTTRCCATRGCAACV		 SELEX
Jolma et al.(2013)
RFX5_2 		0.683 0.481
RFX5
M03460_2.00 		Homo sapiens
BGTTGCYATGGYAACV
BGTTRCCATRGCAACV		 SELEX
Jolma et al.(2013)
RFX5_3 		0.683 0.481
RFX5
M05725_2.00 		Homo sapiens
BGTTRCYANGBGTTGCYRN
NYRGCAACVCNTRGYAACV		 SELEX
Yin et al.(2017)
RFX5_eDBD_HT-SELEX_1 		0.683 0.481
RFX5
M05726_2.00 		Homo sapiens
NYRVYAACSGTTRCYAN
NTRGYAACSGTTRBYRN		 SELEX
Yin et al.(2017)
RFX5_eDBD_HT-SELEX_2 		0.683 0.481
RFX5
M08009_2.00 		Homo sapiens
KCRBYDGTTRCYRRG
CYYRGYAACHRVYGM		 ChIP-seq
Gerstein et al.(2012)
GM12878_RFX5_Stanford 		0.683 0.481
RFX5
M08010_2.00 		Homo sapiens
DBVBYDGTTGCYRGGBVRR
YYBVCCYRGCAACHRVBVH		 ChIP-seq
Gerstein et al.(2012)
H1-hESC_RFX5_Stanford 		0.683 0.481
RFX5
M08011_2.00 		Homo sapiens
TCVBYDGTTDCYRDG
CHYRGHAACHRVBGA		 ChIP-seq
Gerstein et al.(2012)
HeLa-S3_RFX5_Stanford 		0.683 0.481
RFX5
M08012_2.00 		Homo sapiens
YDGTTRCYRKGBVRV
BYBVCMYRGYAACHR		 ChIP-seq
Gerstein et al.(2012)
HepG2_RFX5_Stanford 		0.683 0.481
RFX5
M09364_2.00 		Homo sapiens
VNNVBYDGTTGCYRKGNVRV
BYBNCMYRGCAACHRVBNNB		 Misc
Kulakovskiy et al.(2013)
RFX5_HUMAN.H11MO.0.A 		0.683 0.481
RFX5
M09629_2.00 		Homo sapiens
NDGTTRCYADGV
BCHTRGYAACHN		 Misc
Heinz et al.(2010)
GM12878-Rfx5_GSE31477 		0.683 0.481
RFX5
M11249_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$RFX5_03 		0.683 0.481
RFX5
M11250_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$RFX5_05 		0.683 0.481
RFX5
M05727_2.00 		Homo sapiens
BGTYRYYRNGBGTTGYYRN
NYRRCAACVCNYRRYRACV		 SELEX
Yin et al.(2017)
RFX5_eDBD_Methyl-HT-SELEX_1 		0.683 0.481
RFX5
M05728_2.00 		Homo sapiens
NTRGYAASSGTYRBYRN
NYRVYRACSSTTRCYAN		 SELEX
Yin et al.(2017)
RFX5_eDBD_Methyl-HT-SELEX_2 		0.683 0.481
For this family, TFs with SR scores > 0.650 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Hsal_12778--XP_001120516.1_APIME RFX 190 268

Links

Other RFX family TFs
Other Harpegnathos saltator TFs

228 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ACRE_009170 Acremonium chrysogenum ACRE_009170 I
ARB_01185 Arthroderma benhamiae ARB_01185 N
BBA_00740 Beauveria bassiana BBA_00740 I
Bcin02g05460 Botrytis cinerea Bcin02g05460 I
BDDG_03436 Blastomyces dermatitidis BDDG_03436 N
ACLA_037430 Aspergillus clavatus CADACLAG00003256 N
AFUA_3G09670 Aspergillus fumigatus CADAFUAG00004963 N
CADANGAG00012801 Aspergillus niger CADANGAG00012801 N
ANIA_03075 Aspergillus nidulans CADANIAG00010003 N
CADAORAG00003168 Aspergillus oryzae CADAORAG00003168 N
ATEG_04481 Aspergillus terreus CADATEAG00009053 N
NFIA_067630 Neosartorya fischeri CADNFIAG00006385 N
CCM_05966 Cordyceps militaris CCM_05966 I
CFIO01_08325 Colletotrichum fioriniae CFIO01_08325 I
CGGC5_10678 Colletotrichum gloeosporioides CGGC5_10678 I
CH063_10224 Colletotrichum higginsianum CH063_10224 I
CIMG_01913 Coccidioides immitis CIMG_01913 N
CMQ_3768 Grosmannia clavigera CMQ_3768 I
Cob_01903 Colletotrichum orbiculare Cob_01903 I
CPC735_046040 Coccidioides posadasii CPC735_046040 N
CSUB01_08919 Colletotrichum sublineola CSUB01_08919 I
EURHEDRAFT_375153 Aspergillus ruber EURHEDRAFT_375153 N
F503_03706 Ophiostoma piceae uamh F503_03706 I
FFUJ_08392 Fusarium fujikuroi FFUJ_08392 I
fgenesh1_pm.00168_#_210 Aspergillus carbonarius fgenesh1_pm.00168_#_210 N
fgenesh1_pm.sca_12_chr5_2_0000158 Nectria haematococca fgenesh1_pm.sca_12_chr5_2_0000158 I
FGRRES_17514 Fusarium graminearum FGRRES_17514 I
FPSE_08858 Fusarium pseudograminearum FPSE_08858 I
GGTG_02446 Gaeumannomyces graminis GGTG_02446 I
GLRG_09279 Colletotrichum graminicola GLRG_09279 I
GMDG_05510 Pseudogymnoascus destructans GMDG_05510 I
GMDG_06850 Pseudogymnoascus destructans GMDG_06850 I
GSTUM_00003233001 Tuber melanosporum GSTUM_00003233001 N
GSTUM_00008124001 Tuber melanosporum GSTUM_00008124001 N
H101_05235 Trichophyton interdigitale H101_05235 N
H102_08372 Trichophyton rubrum H102_08372 N
H105_08399 Trichophyton soudanense H105_08399 N
HCBG_02521 Histoplasma capsulatum HCBG_02521 N
HMPREF1624_04642 Sporothrix schenckii HMPREF1624_04642 I
M7I_1858 Glarea lozoyensis M7I_1858 I
MANI_011716 Metarhizium anisopliae MANI_011716 I
MAPG_09501 Magnaporthe poae MAPG_09501 I
MBM_07119 Marssonina brunnea MBM_07119 N
MBR_04909 Metarhizium brunneum MBR_04909 I
MCYG_03418 Microsporum canis MCYG_03418 N
MCYG_03418 Arthroderma otae MCYG_03418 N
MGU_01761 Metarhizium guizhouense MGU_01761 I
MGYG_00581 Microsporum gypseum MGYG_00581 N
MPH_00135 Macrophomina phaseolina MPH_00135 N
NechaG93341 Fusarium solani NechaG93341 I
OCS_02179 Ophiocordyceps sinensis OCS_02179 I
PABG_07523 Paracoccidioides brasiliensis PABG_07523 N
Pc12g15860 Penicillium chrysogenum Pc12g15860 N
PCH_Pc12g15860 Penicillium rubens PCH_Pc12g15860 N
PDE_04982 Penicillium oxalicum PDE_04982 N
PDIP_76170 Penicillium digitatum PDIP_76170 N
PEX1_096620 Penicillium expansum PEX1_096620 N
PFICI_14476 Pestalotiopsis fici PFICI_14476 I
PITC_015280 Penicillium italicum PITC_015280 N
PMAA_045840 Penicillium marneffei PMAA_045840 N
PMAA_045840 Talaromyces marneffei PMAA_045840 N
PV04_04067 Capronia semiimmersa PV04_04067 N
PVAR5_5474 Byssochlamys spectabilis PVAR5_5474 N
S40285_04496 Stachybotrys chlorohalonata S40285_04496 I
S40288_04125 Stachybotrys chartarum S40288_04125 I
SAPIO_CDS3835 Scedosporium apiospermum SAPIO_CDS3835 I
TEQG_00925 Trichophyton equinum TEQG_00925 N
TESG_06256 Trichophyton tonsurans TESG_06256 N
TRIATDRAFT_37495 Trichoderma atroviride TRIATDRAFT_37495 I
TRIREDRAFT_51907 Trichoderma reesei TRIREDRAFT_51907 I
TRIVIDRAFT_114564 Trichoderma virens TRIVIDRAFT_114564 I
TRV_03240 Trichophyton verrucosum TRV_03240 N
TSTA_035080 Talaromyces stipitatus TSTA_035080 N
U727_00431251121 Penicillium solitum U727_00431251121 N
UCRNP2_2614 Neofusicoccum parvum UCRNP2_2614 N
UCRPA7_5598 Togninia minima UCRPA7_5598 I
UREG_06856 Uncinocarpus reesii UREG_06856 N
UV8b_6210 Ustilaginoidea virens UV8b_6210 I
VDAG_09925 Verticillium dahliae VDAG_09925 I
VHEMI08584 Torrubiella hemipterigena VHEMI08584 I
W97_03128 Coniosporium apollinis W97_03128 N
X797_001395 Metarhizium robertsii X797_001395 I