Myotis_brandtii_RFX7_10006263 (Myotis brandtii)
RFX

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF02257 (RFX_DNA_binding) IPR003150 Myotis_brandtii_RFX7_10006263 T319006_2.00 GigaDB (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Rfx7
M00823_2.00 		Mus musculus
GTYRCYRNSB
VSNYRGYRAC		 PBM
Weirauch et al.(2013)
pTH3516 		0.785 0.937
Rfx7
M00187_2.00 		Mus musculus
BGTHDYYRNN
NNYRRHDACV		 PBM
Badis et al.(2009)
Rfxdc2_3516 		0.785 0.937
RFX7
M05729_2.00 		Homo sapiens
BGTTRCYRY
RYRGYAACV		 SELEX
Yin et al.(2017)
RFX7_eDBD_HT-SELEX 		0.785 0.937
RFX7
M05730_2.00 		Homo sapiens
BGTTGCYRB
VYRGCAACV		 SELEX
Yin et al.(2017)
RFX7_eDBD_Methyl-HT-SELEX 		0.785 0.937
RFX5
M03458_2.00 		Homo sapiens
BGTTRCYATRGYAACV
BGTTRCYATRGYAACV		 SELEX
Jolma et al.(2013)
RFX5_1 		0.703 0.570
RFX5
M03459_2.00 		Homo sapiens
BGTTGCYATGGYAACV
BGTTRCCATRGCAACV		 SELEX
Jolma et al.(2013)
RFX5_2 		0.703 0.570
RFX5
M03460_2.00 		Homo sapiens
BGTTGCYATGGYAACV
BGTTRCCATRGCAACV		 SELEX
Jolma et al.(2013)
RFX5_3 		0.703 0.570
RFX5
M05725_2.00 		Homo sapiens
BGTTRCYANGBGTTGCYRN
NYRGCAACVCNTRGYAACV		 SELEX
Yin et al.(2017)
RFX5_eDBD_HT-SELEX_1 		0.703 0.570
RFX5
M05726_2.00 		Homo sapiens
NYRVYAACSGTTRCYAN
NTRGYAACSGTTRBYRN		 SELEX
Yin et al.(2017)
RFX5_eDBD_HT-SELEX_2 		0.703 0.570
RFX5
M08009_2.00 		Homo sapiens
KCRBYDGTTRCYRRG
CYYRGYAACHRVYGM		 ChIP-seq
Gerstein et al.(2012)
GM12878_RFX5_Stanford 		0.703 0.570
RFX5
M08010_2.00 		Homo sapiens
DBVBYDGTTGCYRGGBVRR
YYBVCCYRGCAACHRVBVH		 ChIP-seq
Gerstein et al.(2012)
H1-hESC_RFX5_Stanford 		0.703 0.570
RFX5
M08011_2.00 		Homo sapiens
TCVBYDGTTDCYRDG
CHYRGHAACHRVBGA		 ChIP-seq
Gerstein et al.(2012)
HeLa-S3_RFX5_Stanford 		0.703 0.570
RFX5
M08012_2.00 		Homo sapiens
YDGTTRCYRKGBVRV
BYBVCMYRGYAACHR		 ChIP-seq
Gerstein et al.(2012)
HepG2_RFX5_Stanford 		0.703 0.570
RFX5
M09364_2.00 		Homo sapiens
VNNVBYDGTTGCYRKGNVRV
BYBNCMYRGCAACHRVBNNB		 Misc
Kulakovskiy et al.(2013)
RFX5_HUMAN.H11MO.0.A 		0.703 0.570
RFX5
M09629_2.00 		Homo sapiens
NDGTTRCYADGV
BCHTRGYAACHN		 Misc
Heinz et al.(2010)
GM12878-Rfx5_GSE31477 		0.703 0.570
RFX5
M11249_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$RFX5_03 		0.703 0.570
RFX5
M11250_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$RFX5_05 		0.703 0.570
RFX5
M05727_2.00 		Homo sapiens
BGTYRYYRNGBGTTGYYRN
NYRRCAACVCNYRRYRACV		 SELEX
Yin et al.(2017)
RFX5_eDBD_Methyl-HT-SELEX_1 		0.703 0.570
RFX5
M05728_2.00 		Homo sapiens
NTRGYAASSGTYRBYRN
NYRVYRACSSTTRCYAN		 SELEX
Yin et al.(2017)
RFX5_eDBD_Methyl-HT-SELEX_2 		0.703 0.570
For this family, TFs with SR scores > 0.650 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Myotis_brandtii_RFX7_10006263 RFX 85 165

Links

Other RFX family TFs
Other Myotis brandtii TFs

239 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Aan_R002403 Calypte anna Aan_R002403 N
Alligator_sinensis_CCG001820.1 Alligator sinensis Alligator_sinensis_CCG001820.1 N
Cmyd_10005054 Chelonia mydas Cmyd_10005054 N
GATAD2B Anolis carolinensis ENSACAG00000008791 N
ENSAMEG00000012036 Ailuropoda melanoleuca ENSAMEG00000012036 N
ENSAMXG00000001813 Astyanax mexicanus ENSAMXG00000001813 N
ENSAMXG00000014687 Astyanax mexicanus ENSAMXG00000014687 N
ENSAPLG00000011761 Anas platyrhynchos ENSAPLG00000011761 N
GATAD2B Bos taurus ENSBTAG00000006678 N
ENSBTAP00000008766-D1 Bos grunniens ENSBTAP00000008766-D1 N
GATAD2B Canis familiaris ENSCAFG00000017433 N
GATAD2B Choloepus hoffmanni ENSCHOG00000013411 N
GATAD2B Callithrix jacchus ENSCJAG00000010131 N
GATAD2B Cavia porcellus ENSCPOG00000010326 N
ENSCSAG00000001881 Chlorocebus sabaeus ENSCSAG00000001881 N
gatad2b Danio rerio ENSDARG00000005834 N
GATAD2B Dasypus novemcinctus ENSDNOG00000048326 N
Gatad2b Dipodomys ordii ENSDORG00000013431 N
GATAD2B Equus caballus ENSECAG00000011357 N
GATAD2B Felis catus ENSFCAG00000002751 N
GATAD2B Homo sapiens ENSG00000143614 N
gatad2b Gasterosteus aculeatus ENSGACG00000000510 N
ENSGALG00000029154 Gallus gallus ENSGALG00000029154 N
GATAD2B Gorilla gorilla ENSGGOG00000012553 N
ENSGMOG00000013793 Gadus morhua ENSGMOG00000013793 N
ENSLACG00000013888 Latimeria chalumnae ENSLACG00000013888 N
GATAD2B Loxodonta africana ENSLAFG00000002667 N
ENSLOCG00000008705 Lepisosteus oculatus ENSLOCG00000008705 N
ENSMEUG00000007551 Macropus eugenii ENSMEUG00000007551 N
GATAD2B Microcebus murinus ENSMICG00000008874 N
GATAD2B Myotis lucifugus ENSMLUG00000004859 N
GATAD2B Macaca mulatta ENSMMUG00000002696 N
GATAD2B Monodelphis domestica ENSMODG00000017336 N
ENSMPUG00000008136 Mustela putorius furo ENSMPUG00000008136 N
Gatad2b Mus musculus ENSMUSG00000042390 N
ENSNLEG00000010649 Nomascus leucogenys ENSNLEG00000010649 N
ENSOARG00000001486 Ovis aries ENSOARG00000001486 N
GATAD2B Oryctolagus cuniculus ENSOCUG00000008135 N
GATAD2B Otolemur garnettii ENSOGAG00000004606 N
ENSONIG00000010369 Oreochromis niloticus ENSONIG00000010369 N
GATAD2B Ochotona princeps ENSOPRG00000000027 N
gatad2b Oryzias latipes ENSORLG00000010868 N
ENSP00000357644 Macaca fascicularis ENSP00000357644 N
ENSPANG00000008972 Papio anubis ENSPANG00000008972 N
GATAD2B Procavia capensis ENSPCAG00000001797 N
ENSPFOG00000008182 Poecilia formosa ENSPFOG00000008182 N
ENSPPYG00000029612 Pongo abelii ENSPPYG00000029612 N
ENSPSIG00000004590 Pelodiscus sinensis ENSPSIG00000004590 N
GATAD2B Pan troglodytes ENSPTRG00000001364 N
GATAD2B Pteropus vampyrus ENSPVAG00000011082 N
Gatad2b Rattus norvegicus ENSRNOG00000015553 N
GATAD2B Sorex araneus ENSSARG00000011365 N
ENSSHAG00000011064 Sarcophilus harrisii ENSSHAG00000011064 N
GATAD2B Sus scrofa ENSSSCG00000006562 N
ENSSTOG00000005407 Ictidomys tridecemlineatus ENSSTOG00000005407 N
GATAD2B Tupaia belangeri ENSTBEG00000015791 N
gatad2b Tetraodon nigroviridis ENSTNIG00000002290 N
gatad2b Takifugu rubripes ENSTRUG00000002877 N
ENSTSYG00000012560 Tarsius syrichta ENSTSYG00000012560 N
GATAD2B Tursiops truncatus ENSTTRG00000014779 N
GATAD2B Vicugna pacos ENSVPAG00000010268 N
ENSXMAG00000010412 Xiphophorus maculatus ENSXMAG00000010412 N
Gfo_R009850 Geospiza fortis Gfo_R009850 N
Myotis_brandtii_GATAD2B_10031899 Myotis brandtii Myotis_brandtii_GATAD2B_10031899 N
Ogr01497 Ophisaurus gracilis Ogr01497 N
Pvit_02350 Pogona vitticeps Pvit_02350 N
gatad2b Xenopus tropicalis XB-GENE-5995517 N