fgenesh2_pg.scaffold_503000011 (Branchiostoma floridae)
RFX

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF02257 (RFX_DNA_binding) IPR003150 fgenesh2_pg.scaffold_503000011 T319042_2.00 JGI (2012-Mar-17)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
daf-19
M00709_2.00 		Caenorhabditis elegans
SGTTRCTADG
CHTAGYAACS		 PBM
Narasimhan et al.(2015)
pTH10021 		0.653 0.278
RFX4
M02448_2.00 		Cavia porcellus
GTHDYYNNGN
NCNNRRHDAC		 PBM
Weirauch et al.(2014)
pTH9249 		0.650 0.291
Rfx4
M00186_2.00 		Mus musculus
GTHDYYNNSN
NSNNRRHDAC		 PBM
Badis et al.(2009)
Rfx4_3761 		0.650 0.291
RFX4
M03456_2.00 		Homo sapiens
NGTWRYCATRGHWACN
NGTWDCYATGRYWACN		 SELEX
Jolma et al.(2013)
RFX4_1 		0.650 0.291
RFX4
M03457_2.00 		Homo sapiens
NGTTGCYRRGCAACS
SGTTGCYYRGCAACN		 SELEX
Jolma et al.(2013)
RFX4_2 		0.650 0.291
RFX4
M05721_2.00 		Homo sapiens
BGTWRYCATGRYWACV
BGTWRYCATGRYWACV		 SELEX
Yin et al.(2017)
RFX4_eDBD_HT-SELEX 		0.650 0.291
RFX4
M05722_2.00 		Homo sapiens
BGTWRYCATGRYWACV
BGTWRYCATGRYWACV		 SELEX
Yin et al.(2017)
RFX4_eDBD_Methyl-HT-SELEX 		0.650 0.291
For this family, TFs with SR scores > 0.650 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
fgenesh2_pg.scaffold_503000011 RFX 127 206

Links

Other RFX family TFs
Other Branchiostoma floridae TFs

97 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
D918_02710 Trichuris suis D918_02710 I
TMUE_s0157001700 Trichuris muris TMUE_s0157001700 I
TMUE_s0194001200 Trichuris muris TMUE_s0194001200 N
TTRE_0000013001 Trichuris trichiura TTRE_0000013001 N
TTRE_0000685401 Trichuris trichiura TTRE_0000685401 I