SCUD_0001838101 (Schistosoma curassoni)
RFX

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF02257 (RFX_DNA_binding) IPR003150 SCUD_0001838101 T319240_2.00 WormBase:ParaSite (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
RFX5
M03458_2.00 		Homo sapiens
BGTTRCYATRGYAACV
BGTTRCYATRGYAACV		 SELEX
Jolma et al.(2013)
RFX5_1 		0.660 0.548
RFX5
M03459_2.00 		Homo sapiens
BGTTGCYATGGYAACV
BGTTRCCATRGCAACV		 SELEX
Jolma et al.(2013)
RFX5_2 		0.660 0.548
RFX5
M03460_2.00 		Homo sapiens
BGTTGCYATGGYAACV
BGTTRCCATRGCAACV		 SELEX
Jolma et al.(2013)
RFX5_3 		0.660 0.548
RFX5
M05725_2.00 		Homo sapiens
BGTTRCYANGBGTTGCYRN
NYRGCAACVCNTRGYAACV		 SELEX
Yin et al.(2017)
RFX5_eDBD_HT-SELEX_1 		0.660 0.548
RFX5
M05726_2.00 		Homo sapiens
NYRVYAACSGTTRCYAN
NTRGYAACSGTTRBYRN		 SELEX
Yin et al.(2017)
RFX5_eDBD_HT-SELEX_2 		0.660 0.548
RFX5
M08009_2.00 		Homo sapiens
KCRBYDGTTRCYRRG
CYYRGYAACHRVYGM		 ChIP-seq
Gerstein et al.(2012)
GM12878_RFX5_Stanford 		0.660 0.548
RFX5
M08010_2.00 		Homo sapiens
DBVBYDGTTGCYRGGBVRR
YYBVCCYRGCAACHRVBVH		 ChIP-seq
Gerstein et al.(2012)
H1-hESC_RFX5_Stanford 		0.660 0.548
RFX5
M08011_2.00 		Homo sapiens
TCVBYDGTTDCYRDG
CHYRGHAACHRVBGA		 ChIP-seq
Gerstein et al.(2012)
HeLa-S3_RFX5_Stanford 		0.660 0.548
RFX5
M08012_2.00 		Homo sapiens
YDGTTRCYRKGBVRV
BYBVCMYRGYAACHR		 ChIP-seq
Gerstein et al.(2012)
HepG2_RFX5_Stanford 		0.660 0.548
RFX5
M09364_2.00 		Homo sapiens
VNNVBYDGTTGCYRKGNVRV
BYBNCMYRGCAACHRVBNNB		 Misc
Kulakovskiy et al.(2013)
RFX5_HUMAN.H11MO.0.A 		0.660 0.548
RFX5
M09629_2.00 		Homo sapiens
NDGTTRCYADGV
BCHTRGYAACHN		 Misc
Heinz et al.(2010)
GM12878-Rfx5_GSE31477 		0.660 0.548
RFX5
M11249_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$RFX5_03 		0.660 0.548
RFX5
M11250_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$RFX5_05 		0.660 0.548
RFX5
M05727_2.00 		Homo sapiens
BGTYRYYRNGBGTTGYYRN
NYRRCAACVCNYRRYRACV		 SELEX
Yin et al.(2017)
RFX5_eDBD_Methyl-HT-SELEX_1 		0.660 0.548
RFX5
M05728_2.00 		Homo sapiens
NTRGYAASSGTYRBYRN
NYRVYRACSSTTRCYAN		 SELEX
Yin et al.(2017)
RFX5_eDBD_Methyl-HT-SELEX_2 		0.660 0.548
Rfx7
M00823_2.00 		Mus musculus
GTYRCYRNSB
VSNYRGYRAC		 PBM
Weirauch et al.(2013)
pTH3516 		0.659 0.516
Rfx7
M00187_2.00 		Mus musculus
BGTHDYYRNN
NNYRRHDACV		 PBM
Badis et al.(2009)
Rfxdc2_3516 		0.659 0.516
RFX7
M05729_2.00 		Homo sapiens
BGTTRCYRY
RYRGYAACV		 SELEX
Yin et al.(2017)
RFX7_eDBD_HT-SELEX 		0.659 0.516
RFX7
M05730_2.00 		Homo sapiens
BGTTGCYRB
VYRGCAACV		 SELEX
Yin et al.(2017)
RFX7_eDBD_Methyl-HT-SELEX 		0.659 0.516
For this family, TFs with SR scores > 0.650 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
SCUD_0001838101-mRNA-1 RFX 112 148

Links

Other RFX family TFs
Other Schistosoma curassoni TFs

175 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
AAEL001637 Aedes aegypti AAEL001637 N
AAEL001652 Aedes aegypti AAEL001652 N
AALB001157 Anopheles albimanus AALB001157 N
AALB001160 Anopheles albimanus AALB001160 N
AARA012018 Anopheles arabiensis AARA012018 N
AARA012021 Anopheles arabiensis AARA012021 N
AATE014155 Anopheles atroparvus AATE014155 N
AATE016471 Anopheles atroparvus AATE016471 N
AATE020717 Anopheles atroparvus AATE020717 N
ACEP11448 Atta cephalotes ACEP11448 N
ACHR000531 Anopheles christyi ACHR000531 N
ACHR003205 Anopheles christyi ACHR003205 N
ACOM030952 Anopheles coluzzii ACOM030952 N
ACOM030968 Anopheles coluzzii ACOM030968 N
ACUA001624 Anopheles culicifacies ACUA001624 N
ADAC000872 Anopheles darlingi ADAC000872 N
ADIR000747 Anopheles dirus ADIR000747 N
ADIR000749 Anopheles dirus ADIR000749 N
AEPI000388 Anopheles epiroticus AEPI000388 N
AEPI000391 Anopheles epiroticus AEPI000391 N
AFAF015377 Anopheles farauti AFAF015377 N
AFAF016537 Anopheles farauti AFAF016537 N
AFUN010324 Anopheles funestus AFUN010324 N
AFUN010327 Anopheles funestus AFUN010327 N
AGAP007822 Anopheles gambiae AGAP007822 N
AGAP007824 Anopheles gambiae AGAP007824 N
AMAM001181 Anopheles maculatus AMAM001181 N
AMAM021192 Anopheles maculatus AMAM021192 N
AMEC002017 Anopheles melas AMEC002017 N
AMEC011119 Anopheles melas AMEC011119 N
AMEM007634 Anopheles merus AMEM007634 N
AMEM014363 Anopheles merus AMEM014363 N
AMIN006409 Anopheles minimus AMIN006409 N
AMIN006412 Anopheles minimus AMIN006412 N
AQUA003680 Anopheles quadriannulatus AQUA003680 N
AQUA014420 Anopheles quadriannulatus AQUA014420 N
ASIS001250 Anopheles sinensis ASIS001250 N
ASTEI01637 Anopheles stephensi ASTEI01637 N
Cflo_10835--XP_001121050.1_APIME Camponotus floridanus Cflo_10835--XP_001121050.1_APIME N
CPIJ000953 Culex quinquefasciatus CPIJ000953 N
CPIJ000955 Culex quinquefasciatus CPIJ000955 N
CpipJ_CPIJ000953 Culex pipiens CpipJ_CPIJ000953 N
CpipJ_CPIJ000955 Culex pipiens CpipJ_CPIJ000955 N
DAPPUDRAFT_45040 Daphnia pulex DAPPUDRAFT_45040 N
GB41320 Apis mellifera GB41320 N
Hsal_11851--XP_001121050.1_APIME Harpegnathos saltator Hsal_11851--XP_001121050.1_APIME N
ISCW003677 Ixodes scapularis ISCW003677 N
L798_14385 Zootermopsis nevadensis L798_14385 N
LDEC024027 Leptinotarsa decemlineata LDEC024027 N
SINV12291 Solenopsis invicta SINV12291 N
TC003170 Tribolium castaneum TC003170 N
YQE_07457 Dendroctonus ponderosae YQE_07457 N