CpipJ_CPIJ016826 (Culex pipiens)
Runt

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00853 (Runt) IPR013524 CpipJ_CPIJ016826 T319280_2.00 Broad (2016-May-1)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
RUNX3
M03464_2.00 		Homo sapiens
HRACCGCAAACCRCAN
NTGYGGTTTGCGGTYD		 SELEX
Jolma et al.(2013)
RUNX3_1 		0.779 0.779
RUNX3
M03465_2.00 		Homo sapiens
WAACCRCARN
NYTGYGGTTW		 SELEX
Jolma et al.(2013)
RUNX3_2 		0.779 0.779
RUNX3
M03466_2.00 		Homo sapiens
HDACCRCADWAACCRCRN
NYGYGGTTWHTGYGGTHD		 SELEX
Jolma et al.(2013)
RUNX3_3 		0.779 0.779
RUNX3
M03467_2.00 		Homo sapiens
HRACCRCAAH
DTTGYGGTYD		 SELEX
Jolma et al.(2013)
RUNX3_4 		0.779 0.779
RUNX3
M02751_2.00 		Homo sapiens
WACCRCAM
KTGYGGTW		 SELEX
Jolma et al.(2010)
RUNX3_monomer 		0.779 0.779
RUNX3
M05731_2.00 		Homo sapiens
YWAACCGCAAAAACCGCARV
BYTGCGGTTTTTGCGGTTWR		 SELEX
Yin et al.(2017)
RUNX3_FL_HT-SELEX 		0.779 0.779
RUNX3
M09369_2.00 		Homo sapiens
HAACCACARN
NYTGTGGTTD		 Misc
Kulakovskiy et al.(2013)
RUNX3_HUMAN.H11MO.0.A 		0.779 0.779
Runx3
M09374_2.00 		Mus musculus
NHRACCACARVN
NBYTGTGGTYDN		 Misc
Kulakovskiy et al.(2013)
RUNX3_MOUSE.H11MO.0.A 		0.779 0.779
RUNX3
M11252_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$AML2_Q3_01 		0.779 0.779
RUNX3
M11253_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$AML2_Q3 		0.779 0.779
RUNX3
M11254_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$AML2_Q4 		0.779 0.779
RUNX3
M05732_2.00 		Homo sapiens
HWAACCACRAAAACCACRARN
NYTYGTGGTTTTYGTGGTTWD		 SELEX
Yin et al.(2017)
RUNX3_FL_Methyl-HT-SELEX 		0.779 0.779
Runx1
M08163_2.00 		Mus musculus
HRRCCACARVN
NBYTGTGGYYD		 ChIP-seq
Mathelier et al.(2014)
MA0002.2 		0.768 0.768
RUNX1
M09371_2.00 		Homo sapiens
NWAACCACARV
BYTGTGGTTWN		 Misc
Kulakovskiy et al.(2013)
RUNX1_HUMAN.H11MO.0.A 		0.768 0.768
Runx1
M09372_2.00 		Mus musculus
VWRACCACARVV
BBYTGTGGTYWB		 Misc
Kulakovskiy et al.(2013)
RUNX1_MOUSE.H11MO.0.A 		0.768 0.768
RUNX1
M09632_2.00 		Homo sapiens
HAACCACADV
BHTGTGGTTD		 Misc
Heinz et al.(2010)
Jurkat-RUNX1_GSE29180 		0.768 0.768
RUNX1
M09631_2.00 		Homo sapiens
VCCACWTCCTBY
RVAGGAWGTGGB		 Misc
Heinz et al.(2010)
Jurkat-RUNX1_GSE17954 		0.768 0.768
Runx1
M09633_2.00 		Mus musculus
NWAACCACAR
YTGTGGTTWN		 Misc
Heinz et al.(2010)
HPC7-Runx1_GSE22178 		0.768 0.768
RUNX1
M11258_2.00 		Homo sapiens
ACCRCA
TGYGGT		 Transfac
Matys et al.(2006)
V$AML1_01 		0.768 0.768
RUNX1
M11259_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$AML1_Q4_01 		0.768 0.768
RUNX1
M11260_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$AML1_Q4_02 		0.768 0.768
RUNX1
M11261_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$AML1_Q4 		0.768 0.768
RUNX1
M11262_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$AML1_Q5 		0.768 0.768
RUNX1
M11263_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$AML1_Q6 		0.768 0.768
Runx2
M01307_2.00 		Mus musculus
NHDACCRCAN
NTGYGGTHDN		 PBM
Lambert et al.(2019)
pTH9764 		0.747 0.747
RUNX2
M03468_2.00 		Homo sapiens
HRACCGCAAACCRCRD
HYGYGGTTTGCGGTYD		 SELEX
Jolma et al.(2013)
RUNX2_1 		0.747 0.747
RUNX2
M03469_2.00 		Homo sapiens
HRACCRCADWWACCRCAD
HTGYGGTWWHTGYGGTYD		 SELEX
Jolma et al.(2013)
RUNX2_2 		0.747 0.747
RUNX2
M03470_2.00 		Homo sapiens
WAACCRCAR
YTGYGGTTW		 SELEX
Jolma et al.(2013)
RUNX2_3 		0.747 0.747
RUNX2
M05733_2.00 		Homo sapiens
NHRACCRCADWAACCRCAVN
NBTGYGGTTWHTGYGGTYDN		 SELEX
Yin et al.(2017)
RUNX2_eDBD_HT-SELEX 		0.747 0.747
RUNX2
M09370_2.00 		Homo sapiens
MMHAACCACAVVMH
DKBBTGTGGTTDKK		 Misc
Kulakovskiy et al.(2013)
RUNX2_HUMAN.H11MO.0.A 		0.747 0.747
Runx2
M09373_2.00 		Mus musculus
VWRACCACARVV
BBYTGTGGTYWB		 Misc
Kulakovskiy et al.(2013)
RUNX2_MOUSE.H11MO.0.A 		0.747 0.747
RUNX2
M09630_2.00 		Homo sapiens
NHVACCACANNN
NNNTGTGGTBDN		 Misc
Heinz et al.(2010)
PCa-RUNX2_GSE33889 		0.747 0.747
RUNX2
M11255_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$AML3_Q3 		0.747 0.747
RUNX2
M11256_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$AML3_Q6 		0.747 0.747
RUNX2
M11257_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$OSF2_Q6 		0.747 0.747
RUNX2
M05734_2.00 		Homo sapiens
NWAACCACRAAAACCACRRN
NYYGTGGTTTTYGTGGTTWN		 SELEX
Yin et al.(2017)
RUNX2_eDBD_Methyl-HT-SELEX 		0.747 0.747
lz
M03964_2.00 		Drosophila melanogaster
HRACCGCAAHM
KDTTGCGGTYD		 SELEX
Nitta et al.(2015)
lz_1 		0.737 0.737
lz
M03965_2.00 		Drosophila melanogaster
HVACCRCARWAACCRCAV
BTGYGGTTWYTGYGGTBD		 SELEX
Nitta et al.(2015)
lz_2 		0.737 0.737
lz
M03966_2.00 		Drosophila melanogaster
WRACCRCAWTAACCRCAA
TTGYGGTTAWTGYGGTYW		 SELEX
Nitta et al.(2015)
lz_3 		0.737 0.737
lz
M03967_2.00 		Drosophila melanogaster
HRACCGCAAAACCRCAR
YTGYGGTTTTGCGGTYD		 SELEX
Nitta et al.(2015)
lz_4 		0.737 0.737
run
M06444_2.00 		Drosophila melanogaster
WAACCGCAR
YTGCGGTTW		 B1H
Zhu et al.(2011)
run_Bgb_NBT_FBgn0003300 		0.705 0.705
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
CpipJ_CPIJ016826-RA Runt 93 187

Links

Other Runt family TFs
Other Culex pipiens TFs

273 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Aan_R003860 Calypte anna Aan_R003860 I 0.000
Aan_R015322 Calypte anna Aan_R015322 I 0.000
Afo_R009327 Aptenodytes forsteri Afo_R009327 I 0.000
Alligator_sinensis_CCG001714.1 Alligator sinensis Alligator_sinensis_CCG001714.1 I 0.000
Cmyd_10017459 Chelonia mydas Cmyd_10017459 I 0.000
Cmyd_10021444 Chelonia mydas Cmyd_10021444 I 0.000
NFATC1 Anolis carolinensis ENSACAG00000000941 I 0.000
ENSAMEG00000015941 Ailuropoda melanoleuca ENSAMEG00000015941 I 0.000
ENSAMXG00000005881 Astyanax mexicanus ENSAMXG00000005881 I 0.000
ENSAMXG00000011048 Astyanax mexicanus ENSAMXG00000011048 I 0.000
ENSAPLG00000013017 Anas platyrhynchos ENSAPLG00000013017 I 0.000
NFATC4 Bos taurus ENSBTAG00000006366 I 0.000
ENSBTAP00000000859-D1 Bos grunniens ENSBTAP00000000859-D1 I 0.000
NFATC4 Canis familiaris ENSCAFG00000012375 I 0.000
ENSCJAG00000000574 Callithrix jacchus ENSCJAG00000000574 I 0.000
NFATC1 Callithrix jacchus ENSCJAG00000023446 I 0.000
nfatc3a Danio rerio ENSDARG00000076297 I 0.000
nfatc2b Danio rerio ENSDARG00000079972 I 0.000
NFATC3 Dasypus novemcinctus ENSDNOG00000018583 I 0.000
NFATC4 Equus caballus ENSECAG00000010992 I 0.000
NFATC1 Equus caballus ENSECAG00000019813 I 0.000
NFATC1 Echinops telfairi ENSETEG00000010848 I 0.000
ENSFALG00000007757 Ficedula albicollis ENSFALG00000007757 I 0.000
ENSFALG00000013042 Ficedula albicollis ENSFALG00000013042 I 0.000
ENSFALG00000013333 Ficedula albicollis ENSFALG00000013333 I 0.000
NFATC4 Felis catus ENSFCAG00000005602 I 0.000
NFATC4 Homo sapiens ENSG00000100968 D 0.000
NFATC1 Gasterosteus aculeatus ENSGACG00000005481 I 0.000
NFATC3 Gallus gallus ENSGALG00000003396 I 0.000
NFATC2 Gallus gallus ENSGALG00000007963 I 0.000
ENSGALG00000012654 Gallus gallus ENSGALG00000012654 I 0.000
ENSGMOG00000006631 Gadus morhua ENSGMOG00000006631 I 0.000
ENSGMOG00000017004 Gadus morhua ENSGMOG00000017004 I 0.000
NFATC1 Loxodonta africana ENSLAFG00000008297 I 0.000
NFATC4 Loxodonta africana ENSLAFG00000014579 I 0.000
NFATC3 Loxodonta africana ENSLAFG00000014599 I 0.000
ENSLOCG00000002372 Lepisosteus oculatus ENSLOCG00000002372 I 0.000
NFATC1 Meleagris gallopavo ENSMGAG00000002215 D 0.000
NFATC3 Meleagris gallopavo ENSMGAG00000003992 I 0.000
NFATC2 Meleagris gallopavo ENSMGAG00000009346 I 0.000
NFATC2 Microcebus murinus ENSMICG00000000025 N 0.000
NFATC4 Myotis lucifugus ENSMLUG00000011274 I 0.000
NFATC2 Macaca mulatta ENSMMUG00000012657 N 0.000
ENSMPUG00000005665 Mustela putorius furo ENSMPUG00000005665 I 0.000
ENSMPUG00000016650 Mustela putorius furo ENSMPUG00000016650 I 0.000
Nfatc3 Mus musculus ENSMUSG00000031902 D 0.000
Nfatc1 Mus musculus ENSMUSG00000033016 D 0.000
ENSNLEG00000005116 Nomascus leucogenys ENSNLEG00000005116 I 0.000
ENSOARG00000019084 Ovis aries ENSOARG00000019084 I 0.000
ENSONIG00000007307 Oreochromis niloticus ENSONIG00000007307 I 0.000
ENSONIG00000016552 Oreochromis niloticus ENSONIG00000016552 I 0.000
nfatc1 Oryzias latipes ENSORLG00000008055 I 0.000
ENSP00000388910-D1 Bos grunniens ENSP00000388910-D1 I 0.000
ENSPFOG00000000831 Poecilia formosa ENSPFOG00000000831 I 0.000
ENSPFOG00000021891 Poecilia formosa ENSPFOG00000021891 I 0.000
ENSPPYG00000007483 Pongo abelii ENSPPYG00000007483 I 0.000
ENSPSIG00000013745 Pelodiscus sinensis ENSPSIG00000013745 I 0.000
Nfatc1 Rattus norvegicus ENSRNOG00000017146 I 0.000
Nfatc4 Rattus norvegicus ENSRNOG00000020482 I 0.000
Nfatc3 Rattus norvegicus ENSRNOG00000054264 I 0.000
ENSSARG00000011370 Sorex araneus ENSSARG00000011370 I 0.000
NFATC4 Sus scrofa ENSSSCG00000001986 I 0.000
NFATC2 Tupaia belangeri ENSTBEG00000004525 I 0.000
NFATC3 Taeniopygia guttata ENSTGUG00000007006 I 0.000
ENSTSYG00000005095 Tarsius syrichta ENSTSYG00000005095 I 0.000
ENSXMAG00000000761 Xiphophorus maculatus ENSXMAG00000000761 I 0.000
ENSXMAG00000003976 Xiphophorus maculatus ENSXMAG00000003976 I 0.000
ENSXMAG00000009087 Xiphophorus maculatus ENSXMAG00000009087 I 0.000
Gfo_R000615 Geospiza fortis Gfo_R000615 I 0.000
Gfo_R015940 Geospiza fortis Gfo_R015940 I 0.000
Myotis_brandtii_NFATC3_10015104 Myotis brandtii Myotis_brandtii_NFATC3_10015104 I 0.000
Myotis_brandtii_Nfatc4_10003693 Myotis brandtii Myotis_brandtii_Nfatc4_10003693 I 0.000
Ogr08131 Ophisaurus gracilis Ogr08131 I 0.000
Pvit_03343 Pogona vitticeps Pvit_03343 I 0.000
Pvit_05133 Pogona vitticeps Pvit_05133 I 0.000
Pvit_07799 Pogona vitticeps Pvit_07799 I 0.000
nfatc1 Xenopus tropicalis XB-GENE-876756 D 0.000