runx2b (Danio rerio)
Runt

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00853 (Runt) IPR013524 ENSDARG00000059233 T319360_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Runx2
M01307_2.00 		Mus musculus
NHDACCRCAN
NTGYGGTHDN		 PBM
Lambert et al.(2019)
pTH9764 		0.985 0.985
RUNX2
M03468_2.00 		Homo sapiens
HRACCGCAAACCRCRD
HYGYGGTTTGCGGTYD		 SELEX
Jolma et al.(2013)
RUNX2_1 		0.985 0.985
RUNX2
M03469_2.00 		Homo sapiens
HRACCRCADWWACCRCAD
HTGYGGTWWHTGYGGTYD		 SELEX
Jolma et al.(2013)
RUNX2_2 		0.974 0.974
RUNX2
M03470_2.00 		Homo sapiens
WAACCRCAR
YTGYGGTTW		 SELEX
Jolma et al.(2013)
RUNX2_3 		0.974 0.974
RUNX2
M05733_2.00 		Homo sapiens
NHRACCRCADWAACCRCAVN
NBTGYGGTTWHTGYGGTYDN		 SELEX
Yin et al.(2017)
RUNX2_eDBD_HT-SELEX 		0.985 0.985
RUNX2
M09370_2.00 		Homo sapiens
MMHAACCACAVVMH
DKBBTGTGGTTDKK		 Misc
Kulakovskiy et al.(2013)
RUNX2_HUMAN.H11MO.0.A 		0.985 0.985
Runx2
M09373_2.00 		Mus musculus
VWRACCACARVV
BBYTGTGGTYWB		 Misc
Kulakovskiy et al.(2013)
RUNX2_MOUSE.H11MO.0.A 		0.974 0.974
RUNX2
M09630_2.00 		Homo sapiens
NHVACCACANNN
NNNTGTGGTBDN		 Misc
Heinz et al.(2010)
PCa-RUNX2_GSE33889 		0.974 0.974
RUNX2
M11255_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$AML3_Q3 		0.974 0.974
RUNX2
M11256_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$AML3_Q6 		0.974 0.974
RUNX2
M11257_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$OSF2_Q6 		0.974 0.974
RUNX2
M05734_2.00 		Homo sapiens
NWAACCACRAAAACCACRRN
NYYGTGGTTTTYGTGGTTWN		 SELEX
Yin et al.(2017)
RUNX2_eDBD_Methyl-HT-SELEX 		0.974 0.974
RUNX3
M03464_2.00 		Homo sapiens
HRACCGCAAACCRCAN
NTGYGGTTTGCGGTYD		 SELEX
Jolma et al.(2013)
RUNX3_1 		0.931 0.931
RUNX3
M03465_2.00 		Homo sapiens
WAACCRCARN
NYTGYGGTTW		 SELEX
Jolma et al.(2013)
RUNX3_2 		0.931 0.931
RUNX3
M03466_2.00 		Homo sapiens
HDACCRCADWAACCRCRN
NYGYGGTTWHTGYGGTHD		 SELEX
Jolma et al.(2013)
RUNX3_3 		0.949 0.949
RUNX3
M03467_2.00 		Homo sapiens
HRACCRCAAH
DTTGYGGTYD		 SELEX
Jolma et al.(2013)
RUNX3_4 		0.949 0.949
RUNX3
M02751_2.00 		Homo sapiens
WACCRCAM
KTGYGGTW		 SELEX
Jolma et al.(2010)
RUNX3_monomer 		0.949 0.949
RUNX3
M05731_2.00 		Homo sapiens
YWAACCGCAAAAACCGCARV
BYTGCGGTTTTTGCGGTTWR		 SELEX
Yin et al.(2017)
RUNX3_FL_HT-SELEX 		0.949 0.949
Runx1
M08163_2.00 		Mus musculus
HRRCCACARVN
NBYTGTGGYYD		 ChIP-seq
Mathelier et al.(2014)
MA0002.2 		0.949 0.949
RUNX3
M09369_2.00 		Homo sapiens
HAACCACARN
NYTGTGGTTD		 Misc
Kulakovskiy et al.(2013)
RUNX3_HUMAN.H11MO.0.A 		0.931 0.931
RUNX1
M09371_2.00 		Homo sapiens
NWAACCACARV
BYTGTGGTTWN		 Misc
Kulakovskiy et al.(2013)
RUNX1_HUMAN.H11MO.0.A 		0.949 0.949
Runx3
M09374_2.00 		Mus musculus
NHRACCACARVN
NBYTGTGGTYDN		 Misc
Kulakovskiy et al.(2013)
RUNX3_MOUSE.H11MO.0.A 		0.931 0.931
RUNX3
M11252_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$AML2_Q3_01 		0.931 0.931
RUNX3
M11253_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$AML2_Q3 		0.931 0.931
Runx1
M09372_2.00 		Mus musculus
VWRACCACARVV
BBYTGTGGTYWB		 Misc
Kulakovskiy et al.(2013)
RUNX1_MOUSE.H11MO.0.A 		0.949 0.949
RUNX3
M11254_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$AML2_Q4 		0.931 0.931
RUNX3
M05732_2.00 		Homo sapiens
HWAACCACRAAAACCACRARN
NYTYGTGGTTTTYGTGGTTWD		 SELEX
Yin et al.(2017)
RUNX3_FL_Methyl-HT-SELEX 		0.931 0.931
RUNX1
M09632_2.00 		Homo sapiens
HAACCACADV
BHTGTGGTTD		 Misc
Heinz et al.(2010)
Jurkat-RUNX1_GSE29180 		0.949 0.949
RUNX1
M09631_2.00 		Homo sapiens
VCCACWTCCTBY
RVAGGAWGTGGB		 Misc
Heinz et al.(2010)
Jurkat-RUNX1_GSE17954 		0.949 0.949
Runx1
M09633_2.00 		Mus musculus
NWAACCACAR
YTGTGGTTWN		 Misc
Heinz et al.(2010)
HPC7-Runx1_GSE22178 		0.949 0.949
RUNX1
M11258_2.00 		Homo sapiens
ACCRCA
TGYGGT		 Transfac
Matys et al.(2006)
V$AML1_01 		0.949 0.949
RUNX1
M11259_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$AML1_Q4_01 		0.949 0.949
RUNX1
M11260_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$AML1_Q4_02 		0.949 0.949
RUNX1
M11261_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$AML1_Q4 		0.949 0.949
RUNX1
M11262_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$AML1_Q5 		0.949 0.949
RUNX1
M11263_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$AML1_Q6 		0.949 0.949
lz
M03964_2.00 		Drosophila melanogaster
HRACCGCAAHM
KDTTGCGGTYD		 SELEX
Nitta et al.(2015)
lz_1 		0.795 0.795
lz
M03965_2.00 		Drosophila melanogaster
HVACCRCARWAACCRCAV
BTGYGGTTWYTGYGGTBD		 SELEX
Nitta et al.(2015)
lz_2 		0.795 0.795
lz
M03966_2.00 		Drosophila melanogaster
WRACCRCAWTAACCRCAA
TTGYGGTTAWTGYGGTYW		 SELEX
Nitta et al.(2015)
lz_3 		0.795 0.795
lz
M03967_2.00 		Drosophila melanogaster
HRACCGCAAAACCRCAR
YTGYGGTTTTGCGGTYD		 SELEX
Nitta et al.(2015)
lz_4 		0.731 0.731
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSDARP00000048977 Runt 78 207
ENSDARP00000076702 Runt 50 179
ENSDARP00000076713 Runt 19 57
ENSDARP00000112126 Runt 50 179

Links

Other Runt family TFs
Other Danio rerio TFs

347 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
A1O1_03621 Capronia coronata A1O1_03621 N 0.000
A1O3_07261 Capronia epimyces A1O3_07261 N 0.000
A1O5_07945 Cladophialophora psammophila A1O5_07945 N 0.000
A1O7_05540 Cladophialophora yegresii A1O7_05540 N 0.000
A1O9_03728 Exophiala aquamarina A1O9_03728 N 0.000
AB01725.1 Alternaria brassicicola AB01725.1 N 0.000
BBA_01486 Beauveria bassiana BBA_01486 N 0.000
ACLA_069820 Aspergillus clavatus CADACLAG00007039 N 0.000
CADAFLAG00005698 Aspergillus flavus CADAFLAG00005698 N 0.000
AFUA_2G10850 Aspergillus fumigatus CADAFUAG00004240 N 0.000
CADANGAG00001782 Aspergillus niger CADANGAG00001782 N 0.000
ANIA_05924 Aspergillus nidulans CADANIAG00007107 N 0.000
NFIA_086160 Neosartorya fischeri CADNFIAG00006888 N 0.000
CCM_05346 Cordyceps militaris CCM_05346 N 0.000
EURHEDRAFT_450545 Aspergillus ruber EURHEDRAFT_450545 N 0.000
e_gw1.3.249.1 Cryphonectria parasitica e_gw1.3.249.1 N 0.000
fgenesh1_pg.00866_#_308 Aspergillus carbonarius fgenesh1_pg.00866_#_308 N 0.000
G647_09706 Cladophialophora carrionii G647_09706 N 0.000
GGTG_02836 Gaeumannomyces graminis GGTG_02836 I 0.000
GMDG_04003 Pseudogymnoascus destructans GMDG_04003 N 0.000
HCBG_07158 Histoplasma capsulatum HCBG_07158 N 0.000
HMPREF1120_01168 Exophiala dermatitidis HMPREF1120_01168 N 0.000
HMPREF1541_01199 Cyphellophora europaea HMPREF1541_01199 N 0.000
LEMA_P057000.1 Leptosphaeria maculans LEMA_P057000.1 N 0.000
M437DRAFT_45546 Aureobasidium melanogenum M437DRAFT_45546 I 0.000
M438DRAFT_281522 Aureobasidium pullulans M438DRAFT_281522 I 0.000
MAPG_00999 Magnaporthe poae MAPG_00999 I 0.000
PAAG_12589 Paracoccidioides sp lutzii PAAG_12589 N 0.000
PABG_07685 Paracoccidioides brasiliensis PABG_07685 N 0.000
Pc22g21140 Penicillium chrysogenum Pc22g21140 N 0.000
PCH_Pc22g21140 Penicillium rubens PCH_Pc22g21140 N 0.000
PDE_03860 Penicillium oxalicum PDE_03860 N 0.000
PDIP_63820 Penicillium digitatum PDIP_63820 N 0.000
PFICI_04665 Pestalotiopsis fici PFICI_04665 I 0.000
PITC_004270 Penicillium italicum PITC_004270 N 0.000
PV04_05906 Capronia semiimmersa PV04_05906 N 0.000
PV05_04590 Exophiala xenobiotica PV05_04590 N 0.000
PV06_01163 Exophiala oligosperma PV06_01163 N 0.000
PV07_04349 Cladophialophora immunda PV07_04349 N 0.000
PV10_06983 Exophiala mesophila PV10_06983 N 0.000
PVAR5_2411 Byssochlamys spectabilis PVAR5_2411 N 0.000
U727_00431202221 Penicillium solitum U727_00431202221 N 0.000
VHEMI03538 Torrubiella hemipterigena VHEMI03538 N 0.000
Z517_04112 Fonsecaea pedrosoi Z517_04112 N 0.000
Z518_08281 Rhinocladiella mackenziei Z518_08281 N 0.000
Z519_07787 Cladophialophora bantiana Z519_07787 N 0.000