RUNX3 (Loxodonta africana)
Runt

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00853 (Runt) IPR013524 ENSLAFG00000008382 T319404_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
RUNX3
M03464_2.00 		Homo sapiens
HRACCGCAAACCRCAN
NTGYGGTTTGCGGTYD		 SELEX
Jolma et al.(2013)
RUNX3_1 		0.992 0.992
RUNX3
M03465_2.00 		Homo sapiens
WAACCRCARN
NYTGYGGTTW		 SELEX
Jolma et al.(2013)
RUNX3_2 		0.992 0.992
RUNX3
M03466_2.00 		Homo sapiens
HDACCRCADWAACCRCRN
NYGYGGTTWHTGYGGTHD		 SELEX
Jolma et al.(2013)
RUNX3_3 		0.992 0.992
RUNX3
M03467_2.00 		Homo sapiens
HRACCRCAAH
DTTGYGGTYD		 SELEX
Jolma et al.(2013)
RUNX3_4 		0.992 0.992
RUNX3
M02751_2.00 		Homo sapiens
WACCRCAM
KTGYGGTW		 SELEX
Jolma et al.(2010)
RUNX3_monomer 		0.992 0.992
RUNX3
M05731_2.00 		Homo sapiens
YWAACCGCAAAAACCGCARV
BYTGCGGTTTTTGCGGTTWR		 SELEX
Yin et al.(2017)
RUNX3_FL_HT-SELEX 		0.992 0.992
RUNX3
M09369_2.00 		Homo sapiens
HAACCACARN
NYTGTGGTTD		 Misc
Kulakovskiy et al.(2013)
RUNX3_HUMAN.H11MO.0.A 		0.992 0.992
Runx3
M09374_2.00 		Mus musculus
NHRACCACARVN
NBYTGTGGTYDN		 Misc
Kulakovskiy et al.(2013)
RUNX3_MOUSE.H11MO.0.A 		0.992 0.992
RUNX3
M11252_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$AML2_Q3_01 		0.992 0.992
RUNX3
M11253_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$AML2_Q3 		0.992 0.992
RUNX3
M11254_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$AML2_Q4 		0.992 0.992
RUNX3
M05732_2.00 		Homo sapiens
HWAACCACRAAAACCACRARN
NYTYGTGGTTTTYGTGGTTWD		 SELEX
Yin et al.(2017)
RUNX3_FL_Methyl-HT-SELEX 		0.992 0.992
Runx2
M01307_2.00 		Mus musculus
NHDACCRCAN
NTGYGGTHDN		 PBM
Lambert et al.(2019)
pTH9764 		0.938 0.938
RUNX2
M03468_2.00 		Homo sapiens
HRACCGCAAACCRCRD
HYGYGGTTTGCGGTYD		 SELEX
Jolma et al.(2013)
RUNX2_1 		0.938 0.938
RUNX2
M03469_2.00 		Homo sapiens
HRACCRCADWWACCRCAD
HTGYGGTWWHTGYGGTYD		 SELEX
Jolma et al.(2013)
RUNX2_2 		0.938 0.938
RUNX2
M03470_2.00 		Homo sapiens
WAACCRCAR
YTGYGGTTW		 SELEX
Jolma et al.(2013)
RUNX2_3 		0.938 0.938
RUNX2
M05733_2.00 		Homo sapiens
NHRACCRCADWAACCRCAVN
NBTGYGGTTWHTGYGGTYDN		 SELEX
Yin et al.(2017)
RUNX2_eDBD_HT-SELEX 		0.938 0.938
RUNX2
M09370_2.00 		Homo sapiens
MMHAACCACAVVMH
DKBBTGTGGTTDKK		 Misc
Kulakovskiy et al.(2013)
RUNX2_HUMAN.H11MO.0.A 		0.938 0.938
Runx2
M09373_2.00 		Mus musculus
VWRACCACARVV
BBYTGTGGTYWB		 Misc
Kulakovskiy et al.(2013)
RUNX2_MOUSE.H11MO.0.A 		0.938 0.938
RUNX2
M09630_2.00 		Homo sapiens
NHVACCACANNN
NNNTGTGGTBDN		 Misc
Heinz et al.(2010)
PCa-RUNX2_GSE33889 		0.938 0.938
RUNX2
M11255_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$AML3_Q3 		0.938 0.938
RUNX2
M11256_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$AML3_Q6 		0.938 0.938
RUNX2
M11257_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$OSF2_Q6 		0.938 0.938
RUNX2
M05734_2.00 		Homo sapiens
NWAACCACRAAAACCACRRN
NYYGTGGTTTTYGTGGTTWN		 SELEX
Yin et al.(2017)
RUNX2_eDBD_Methyl-HT-SELEX 		0.938 0.938
Runx1
M08163_2.00 		Mus musculus
HRRCCACARVN
NBYTGTGGYYD		 ChIP-seq
Mathelier et al.(2014)
MA0002.2 		0.923 0.923
RUNX1
M09371_2.00 		Homo sapiens
NWAACCACARV
BYTGTGGTTWN		 Misc
Kulakovskiy et al.(2013)
RUNX1_HUMAN.H11MO.0.A 		0.923 0.923
Runx1
M09372_2.00 		Mus musculus
VWRACCACARVV
BBYTGTGGTYWB		 Misc
Kulakovskiy et al.(2013)
RUNX1_MOUSE.H11MO.0.A 		0.923 0.923
RUNX1
M09632_2.00 		Homo sapiens
HAACCACADV
BHTGTGGTTD		 Misc
Heinz et al.(2010)
Jurkat-RUNX1_GSE29180 		0.923 0.923
RUNX1
M09631_2.00 		Homo sapiens
VCCACWTCCTBY
RVAGGAWGTGGB		 Misc
Heinz et al.(2010)
Jurkat-RUNX1_GSE17954 		0.923 0.923
Runx1
M09633_2.00 		Mus musculus
NWAACCACAR
YTGTGGTTWN		 Misc
Heinz et al.(2010)
HPC7-Runx1_GSE22178 		0.923 0.923
RUNX1
M11258_2.00 		Homo sapiens
ACCRCA
TGYGGT		 Transfac
Matys et al.(2006)
V$AML1_01 		0.923 0.923
RUNX1
M11259_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$AML1_Q4_01 		0.923 0.923
RUNX1
M11260_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$AML1_Q4_02 		0.923 0.923
RUNX1
M11261_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$AML1_Q4 		0.923 0.923
RUNX1
M11262_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$AML1_Q5 		0.923 0.923
RUNX1
M11263_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$AML1_Q6 		0.923 0.923
lz
M03964_2.00 		Drosophila melanogaster
HRACCGCAAHM
KDTTGCGGTYD		 SELEX
Nitta et al.(2015)
lz_1 		0.723 0.723
lz
M03965_2.00 		Drosophila melanogaster
HVACCRCARWAACCRCAV
BTGYGGTTWYTGYGGTBD		 SELEX
Nitta et al.(2015)
lz_2 		0.723 0.723
lz
M03966_2.00 		Drosophila melanogaster
WRACCRCAWTAACCRCAA
TTGYGGTTAWTGYGGTYW		 SELEX
Nitta et al.(2015)
lz_3 		0.723 0.723
lz
M03967_2.00 		Drosophila melanogaster
HRACCGCAAAACCRCAR
YTGYGGTTTTGCGGTYD		 SELEX
Nitta et al.(2015)
lz_4 		0.723 0.723
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSLAFP00000007031 Runt 72 201
ENSLAFP00000019882 Runt 37 166

Links

Other Runt family TFs
Other Loxodonta africana TFs

300 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Aan_R004657 Calypte anna Aan_R004657 I 0.000
Aan_R005501 Calypte anna Aan_R005501 N 0.000
ACYPI005198 Acyrthosiphon pisum ACYPI005198 I 0.000
Afo_R002778 Aptenodytes forsteri Afo_R002778 I 0.000
Afo_R015384 Aptenodytes forsteri Afo_R015384 N 0.000
Alligator_sinensis_CCG000560.1 Alligator sinensis Alligator_sinensis_CCG000560.1 N 0.000
Alligator_sinensis_CCG019430.1 Alligator sinensis Alligator_sinensis_CCG019430.1 I 0.000
Cmyd_10006239 Chelonia mydas Cmyd_10006239 I 0.000
EFV61981 Trichinella spiralis EFV61981 I 0.000
MXD1 Anolis carolinensis ENSACAG00000006004 I 0.000
MXI1 Anolis carolinensis ENSACAG00000006009 I 0.000
MXD4 Anolis carolinensis ENSACAG00000007819 N 0.000
ENSAMEG00000005262 Ailuropoda melanoleuca ENSAMEG00000005262 I 0.000
ENSAMEG00000014340 Ailuropoda melanoleuca ENSAMEG00000014340 N 0.000
ENSAMEG00000016108 Ailuropoda melanoleuca ENSAMEG00000016108 I 0.000
ENSAMXG00000004433 Astyanax mexicanus ENSAMXG00000004433 I 0.000
ENSAPLG00000004350 Anas platyrhynchos ENSAPLG00000004350 I 0.000
ENSAPLG00000004997 Anas platyrhynchos ENSAPLG00000004997 N 0.000
ENSAPLG00000009927 Anas platyrhynchos ENSAPLG00000009927 N 0.000
MXD1 Bos taurus ENSBTAG00000001042 I 0.000
MXD4 Bos taurus ENSBTAG00000015209 N 0.000
MXI1 Bos taurus ENSBTAG00000017263 I 0.000
ENSBTAP00000048182-D1 Bos grunniens ENSBTAP00000048182-D1 I 0.000
MXI1 Canis familiaris ENSCAFG00000010706 I 0.000
MXD4 Canis familiaris ENSCAFG00000014873 N 0.000
MXD1 Canis familiaris ENSCAFG00000032746 I 0.000
MXD1 Choloepus hoffmanni ENSCHOG00000003047 I 0.000
MXI1 Choloepus hoffmanni ENSCHOG00000006556 I 0.000
MXI1 Callithrix jacchus ENSCJAG00000018614 I 0.000
MXD1 Callithrix jacchus ENSCJAG00000019266 I 0.000
ENSCPOG00000000336 Cavia porcellus ENSCPOG00000000336 I 0.000
ENSCPOG00000007162 Cavia porcellus ENSCPOG00000007162 I 0.000
MXD4 Cavia porcellus ENSCPOG00000022492 N 0.000
MXI1 Cavia porcellus ENSCPOG00000022901 I 0.000
ENSCSAG00000005171 Chlorocebus sabaeus ENSCSAG00000005171 I 0.000
ENSCSAG00000015119 Chlorocebus sabaeus ENSCSAG00000015119 I 0.000
ENSCSAG00000015741 Chlorocebus sabaeus ENSCSAG00000015741 N 0.000
mxd1 Danio rerio ENSDARG00000032039 N 0.000
mxi1 Danio rerio ENSDARG00000040884 I 0.000
mxd4 Danio rerio ENSDARG00000054031 N 0.000
MXI1 Dasypus novemcinctus ENSDNOG00000002479 I 0.000
MXD1 Dasypus novemcinctus ENSDNOG00000034010 I 0.000
ENSDORG00000001608 Dipodomys ordii ENSDORG00000001608 I 0.000
Mxi1 Dipodomys ordii ENSDORG00000005656 I 0.000
MXD4 Equus caballus ENSECAG00000002580 N 0.000
MXD1 Equus caballus ENSECAG00000011257 I 0.000
MXD1 Echinops telfairi ENSETEG00000017347 I 0.000
ENSFALG00000002308 Ficedula albicollis ENSFALG00000002308 I 0.000
ENSFALG00000009868 Ficedula albicollis ENSFALG00000009868 N 0.000
MXI1 Felis catus ENSFCAG00000004882 I 0.000
MXD4 Felis catus ENSFCAG00000012927 N 0.000
MXD1 Felis catus ENSFCAG00000030345 I 0.000
MXD1 Homo sapiens ENSG00000059728 I 0.000
MXI1 Homo sapiens ENSG00000119950 D 0.000
MXD4 Homo sapiens ENSG00000123933 N 0.000
mxd1 Gasterosteus aculeatus ENSGACG00000013215 I 0.000
mxd4 Gasterosteus aculeatus ENSGACG00000017587 N 0.000
MXI1 Gallus gallus ENSGALG00000008555 I 0.000
MXD1 Gallus gallus ENSGALG00000013882 I 0.000
MXD4 Gallus gallus ENSGALG00000015688 N 0.000
MXD4 Gorilla gorilla ENSGGOG00000000747 N 0.000
MXD1 Gorilla gorilla ENSGGOG00000011287 I 0.000
MXI1 Gorilla gorilla ENSGGOG00000013614 I 0.000
ENSLACG00000006663 Latimeria chalumnae ENSLACG00000006663 N 0.000
ENSLACG00000017438 Latimeria chalumnae ENSLACG00000017438 I 0.000
MXI1 Loxodonta africana ENSLAFG00000014348 I 0.000
MXD4 Loxodonta africana ENSLAFG00000026709 N 0.000
ENSLOCG00000002303 Lepisosteus oculatus ENSLOCG00000002303 N 0.000
ENSLOCG00000012358 Lepisosteus oculatus ENSLOCG00000012358 I 0.000
ENSLOCG00000015320 Lepisosteus oculatus ENSLOCG00000015320 I 0.000
ENSMEUG00000013427 Macropus eugenii ENSMEUG00000013427 N 0.000
ENSMEUG00000013693 Macropus eugenii ENSMEUG00000013693 I 0.000
MXD1 Meleagris gallopavo ENSMGAG00000003405 I 0.000
MXI1 Meleagris gallopavo ENSMGAG00000010768 I 0.000
MXD4 Meleagris gallopavo ENSMGAG00000013027 N 0.000
ENSMMUG00000001160 Macaca mulatta ENSMMUG00000001160 N 0.000
ENSMMUG00000010226 Macaca mulatta ENSMMUG00000010226 I 0.000
MXI1 Macaca mulatta ENSMMUG00000014350 I 0.000
MXD4 Monodelphis domestica ENSMODG00000004033 N 0.000
MXI1 Monodelphis domestica ENSMODG00000010546 I 0.000
MXD1 Monodelphis domestica ENSMODG00000011481 I 0.000
ENSMPUG00000002095 Mustela putorius furo ENSMPUG00000002095 I 0.000
ENSMPUG00000007107 Mustela putorius furo ENSMPUG00000007107 I 0.000
ENSMPUG00000010989 Mustela putorius furo ENSMPUG00000010989 N 0.000
Mxd1 Mus musculus ENSMUSG00000001156 I 0.000
Mxi1 Mus musculus ENSMUSG00000025025 D 0.000
Mxd4 Mus musculus ENSMUSG00000037235 N 0.000
ENSNLEG00000010141 Nomascus leucogenys ENSNLEG00000010141 I 0.000
ENSNLEG00000015457 Nomascus leucogenys ENSNLEG00000015457 I 0.000
MXI1 Ornithorhynchus anatinus ENSOANG00000001600 I 0.000
ENSOARG00000009456 Ovis aries ENSOARG00000009456 I 0.000
ENSOARG00000019742 Ovis aries ENSOARG00000019742 I 0.000
MXD4 Oryctolagus cuniculus ENSOCUG00000005063 N 0.000
MXD1 Oryctolagus cuniculus ENSOCUG00000015820 I 0.000
MXI1 Otolemur garnettii ENSOGAG00000000570 I 0.000
MXD1 Otolemur garnettii ENSOGAG00000008412 I 0.000
MXD4 Otolemur garnettii ENSOGAG00000011305 N 0.000
ENSONIG00000000432 Oreochromis niloticus ENSONIG00000000432 I 0.000
ENSONIG00000015871 Oreochromis niloticus ENSONIG00000015871 I 0.000
ENSONIG00000016308 Oreochromis niloticus ENSONIG00000016308 I 0.000
ENSONIG00000017548 Oreochromis niloticus ENSONIG00000017548 N 0.000
MXI1 Oryzias latipes ENSORLG00000005955 I 0.000
mxd4 Oryzias latipes ENSORLG00000006439 N 0.000
mxi1 Oryzias latipes ENSORLG00000015172 I 0.000
mxd1 Oryzias latipes ENSORLG00000015461 I 0.000
ENSP00000264444 Macaca fascicularis ENSP00000264444 I 0.000
ENSP00000264444-D1 Bos grunniens ENSP00000264444-D1 I 0.000
ENSP00000331152 Macaca fascicularis ENSP00000331152 I 0.000
ENSP00000337889 Macaca fascicularis ENSP00000337889 N 0.000
ENSPANG00000000314 Papio anubis ENSPANG00000000314 I 0.000
ENSPANG00000020804 Papio anubis ENSPANG00000020804 I 0.000
ENSPANG00000024535 Papio anubis ENSPANG00000024535 N 0.000
MXD1 Procavia capensis ENSPCAG00000001189 I 0.000
ENSPFOG00000004367 Poecilia formosa ENSPFOG00000004367 I 0.000
ENSPFOG00000011915 Poecilia formosa ENSPFOG00000011915 N 0.000
ENSPFOG00000017086 Poecilia formosa ENSPFOG00000017086 I 0.000
ENSPFOG00000021922 Poecilia formosa ENSPFOG00000021922 I 0.000
ENSPMAG00000001074 Petromyzon marinus ENSPMAG00000001074 I 0.000
ENSPPYG00000012331 Pongo abelii ENSPPYG00000012331 I 0.000
ENSPPYG00000014540 Pongo abelii ENSPPYG00000014540 N 0.000
ENSPSIG00000012742 Pelodiscus sinensis ENSPSIG00000012742 I 0.000
ENSPSIG00000014955 Pelodiscus sinensis ENSPSIG00000014955 N 0.000
ENSPSIG00000016320 Pelodiscus sinensis ENSPSIG00000016320 N 0.000
MXI1 Pan troglodytes ENSPTRG00000002936 I 0.000
MXD1 Pan troglodytes ENSPTRG00000012023 I 0.000
MXD4 Pan troglodytes ENSPTRG00000015844 N 0.000
MXD1 Pteropus vampyrus ENSPVAG00000001244 I 0.000
MXD4 Pteropus vampyrus ENSPVAG00000011169 N 0.000
MXI1 Pteropus vampyrus ENSPVAG00000014983 I 0.000
Mxd4 Rattus norvegicus ENSRNOG00000015033 N 0.000
Mxd1 Rattus norvegicus ENSRNOG00000017720 I 0.000
Mxi1 Rattus norvegicus ENSRNOG00000034078 I 0.000
MXD1 Sorex araneus ENSSARG00000004728 I 0.000
ENSSHAG00000005374 Sarcophilus harrisii ENSSHAG00000005374 I 0.000
ENSSHAG00000011878 Sarcophilus harrisii ENSSHAG00000011878 N 0.000
MXD1 Sus scrofa ENSSSCG00000008334 I 0.000
MXD4 Sus scrofa ENSSSCG00000008687 N 0.000
ENSSTOG00000000718 Ictidomys tridecemlineatus ENSSTOG00000000718 I 0.000
ENSSTOG00000025776 Ictidomys tridecemlineatus ENSSTOG00000025776 I 0.000
ENSSTOG00000028770 Ictidomys tridecemlineatus ENSSTOG00000028770 N 0.000
MXD1 Tupaia belangeri ENSTBEG00000005535 I 0.000
ENSTBEG00000017602 Tupaia belangeri ENSTBEG00000017602 I 0.000
MXD4 Taeniopygia guttata ENSTGUG00000010530 N 0.000
ENSTGUG00000010598 Taeniopygia guttata ENSTGUG00000010598 I 0.000
mxd1 Tetraodon nigroviridis ENSTNIG00000000414 I 0.000
mxi1 Tetraodon nigroviridis ENSTNIG00000010585 I 0.000
MXI1 Tetraodon nigroviridis ENSTNIG00000013330 I 0.000
mxd4 Tetraodon nigroviridis ENSTNIG00000018042 N 0.000
mxd4 Takifugu rubripes ENSTRUG00000003046 N 0.000
MXI1 Takifugu rubripes ENSTRUG00000006785 I 0.000
mxd1 Takifugu rubripes ENSTRUG00000014843 N 0.000
MXI1 Tursiops truncatus ENSTTRG00000007895 I 0.000
MXD1 Vicugna pacos ENSVPAG00000001762 I 0.000
MXI1 Vicugna pacos ENSVPAG00000003400 I 0.000
ENSXMAG00000004566 Xiphophorus maculatus ENSXMAG00000004566 I 0.000
ENSXMAG00000005473 Xiphophorus maculatus ENSXMAG00000005473 N 0.000
ENSXMAG00000007056 Xiphophorus maculatus ENSXMAG00000007056 I 0.000
ENSXMAG00000012758 Xiphophorus maculatus ENSXMAG00000012758 I 0.000
Gfo_R002259 Geospiza fortis Gfo_R002259 I 0.000
Gfo_R003202 Geospiza fortis Gfo_R003202 N 0.000
Myotis_brandtii_Mxi1_10027965 Myotis brandtii Myotis_brandtii_Mxi1_10027965 I 0.000
NV10716 Nasonia vitripennis NV10716 I 0.000
Ogr05439 Ophisaurus gracilis Ogr05439 I 0.000
Ogr11151 Ophisaurus gracilis Ogr11151 I 0.000
Ogr18275 Ophisaurus gracilis Ogr18275 N 0.000
Pvit_06637 Pogona vitticeps Pvit_06637 I 0.000
Pvit_07222 Pogona vitticeps Pvit_07222 I 0.000
Pvit_14853 Pogona vitticeps Pvit_14853 N 0.000
RPRC006485 Rhodnius prolixus RPRC006485 I 0.000
Tal_R006513 Tyto alba Tal_R006513 I 0.000
Tal_R007717 Tyto alba Tal_R007717 N 0.000
mxi1 Xenopus tropicalis XB-GENE-493086 I 0.000
mxd4.L Xenopus laevis XB-GENE-6252709 N 0.000
mxd4.S Xenopus laevis XB-GENE-6256011 N 0.000
mxd4 Xenopus tropicalis XB-GENE-6257573 N 0.000
mxi1.L Xenopus laevis XB-GENE-865794 I 0.000
mxd1 Xenopus tropicalis XB-GENE-943715 N 0.000
mxd1.L Xenopus laevis XB-GENE-943720 N 0.000