CIS-BP Database: Catalog of Inferred Sequence Binding Preferences

TF Information

RPRC005391 *(Rhodnius prolixus)* Runt
Pfam ID	Interpro ID	Gene ID	CIS-BP ID	Sequence source	Animal TF db
PF00853 (Runt)	IPR013524	RPRC005391	T319617_2.00	Ensembl (2018-Dec-8)	Link out
Directly determined binding motifs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
No direct experiments
Motifs from related TFs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
lz M03964_2.00	Drosophila melanogaster	HRACCGCAAHM	KDTTGCGGTYD	SELEX Nitta et al.(2015) lz_1	0.846	0.846
lz M03965_2.00	Drosophila melanogaster	HVACCRCARWAACCRCAV	BTGYGGTTWYTGYGGTBD	SELEX Nitta et al.(2015) lz_2	0.846	0.846
lz M03966_2.00	Drosophila melanogaster	WRACCRCAWTAACCRCAA	TTGYGGTTAWTGYGGTYW	SELEX Nitta et al.(2015) lz_3	0.846	0.846
lz M03967_2.00	Drosophila melanogaster	HRACCGCAAAACCRCAR	YTGYGGTTTTGCGGTYD	SELEX Nitta et al.(2015) lz_4	0.846	0.846
Runx2 M01307_2.00	Mus musculus	NHDACCRCAN	NTGYGGTHDN	PBM Lambert et al.(2019) pTH9764	0.785	0.785
RUNX2 M03468_2.00	Homo sapiens	HRACCGCAAACCRCRD	HYGYGGTTTGCGGTYD	SELEX Jolma et al.(2013) RUNX2_1	0.785	0.785
RUNX2 M03469_2.00	Homo sapiens	HRACCRCADWWACCRCAD	HTGYGGTWWHTGYGGTYD	SELEX Jolma et al.(2013) RUNX2_2	0.785	0.785
RUNX2 M03470_2.00	Homo sapiens	WAACCRCAR	YTGYGGTTW	SELEX Jolma et al.(2013) RUNX2_3	0.785	0.785
RUNX2 M05733_2.00	Homo sapiens	NHRACCRCADWAACCRCAVN	NBTGYGGTTWHTGYGGTYDN	SELEX Yin et al.(2017) RUNX2_eDBD_HT-SELEX	0.785	0.785
RUNX2 M09370_2.00	Homo sapiens	MMHAACCACAVVMH	DKBBTGTGGTTDKK	Misc Kulakovskiy et al.(2013) RUNX2_HUMAN.H11MO.0.A	0.785	0.785
Runx2 M09373_2.00	Mus musculus	VWRACCACARVV	BBYTGTGGTYWB	Misc Kulakovskiy et al.(2013) RUNX2_MOUSE.H11MO.0.A	0.785	0.785
RUNX2 M09630_2.00	Homo sapiens	NHVACCACANNN	NNNTGTGGTBDN	Misc Heinz et al.(2010) PCa-RUNX2_GSE33889	0.785	0.785
RUNX2 M11255_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$AML3_Q3	0.785	0.785
RUNX2 M11256_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$AML3_Q6	0.785	0.785
RUNX2 M11257_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$OSF2_Q6	0.785	0.785
RUNX2 M05734_2.00	Homo sapiens	NWAACCACRAAAACCACRRN	NYYGTGGTTTTYGTGGTTWN	SELEX Yin et al.(2017) RUNX2_eDBD_Methyl-HT-SELEX	0.785	0.785
Runx1 M08163_2.00	Mus musculus	HRRCCACARVN	NBYTGTGGYYD	ChIP-seq Mathelier et al.(2014) MA0002.2	0.777	0.777
RUNX1 M09371_2.00	Homo sapiens	NWAACCACARV	BYTGTGGTTWN	Misc Kulakovskiy et al.(2013) RUNX1_HUMAN.H11MO.0.A	0.777	0.777
Runx1 M09372_2.00	Mus musculus	VWRACCACARVV	BBYTGTGGTYWB	Misc Kulakovskiy et al.(2013) RUNX1_MOUSE.H11MO.0.A	0.777	0.777
RUNX1 M09632_2.00	Homo sapiens	HAACCACADV	BHTGTGGTTD	Misc Heinz et al.(2010) Jurkat-RUNX1_GSE29180	0.777	0.777
RUNX1 M09631_2.00	Homo sapiens	VCCACWTCCTBY	RVAGGAWGTGGB	Misc Heinz et al.(2010) Jurkat-RUNX1_GSE17954	0.777	0.777
Runx1 M09633_2.00	Mus musculus	NWAACCACAR	YTGTGGTTWN	Misc Heinz et al.(2010) HPC7-Runx1_GSE22178	0.777	0.777
RUNX1 M11258_2.00	Homo sapiens	ACCRCA	TGYGGT	Transfac Matys et al.(2006) V$AML1_01	0.777	0.777
RUNX1 M11259_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$AML1_Q4_01	0.777	0.777
RUNX1 M11260_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$AML1_Q4_02	0.777	0.777
RUNX1 M11261_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$AML1_Q4	0.777	0.777
RUNX1 M11262_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$AML1_Q5	0.777	0.777
RUNX1 M11263_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$AML1_Q6	0.777	0.777
RUNX3 M03464_2.00	Homo sapiens	HRACCGCAAACCRCAN	NTGYGGTTTGCGGTYD	SELEX Jolma et al.(2013) RUNX3_1	0.762	0.762
RUNX3 M03465_2.00	Homo sapiens	WAACCRCARN	NYTGYGGTTW	SELEX Jolma et al.(2013) RUNX3_2	0.762	0.762
RUNX3 M03466_2.00	Homo sapiens	HDACCRCADWAACCRCRN	NYGYGGTTWHTGYGGTHD	SELEX Jolma et al.(2013) RUNX3_3	0.762	0.762
RUNX3 M03467_2.00	Homo sapiens	HRACCRCAAH	DTTGYGGTYD	SELEX Jolma et al.(2013) RUNX3_4	0.762	0.762
RUNX3 M02751_2.00	Homo sapiens	WACCRCAM	KTGYGGTW	SELEX Jolma et al.(2010) RUNX3_monomer	0.762	0.762
RUNX3 M05731_2.00	Homo sapiens	YWAACCGCAAAAACCGCARV	BYTGCGGTTTTTGCGGTTWR	SELEX Yin et al.(2017) RUNX3_FL_HT-SELEX	0.762	0.762
RUNX3 M09369_2.00	Homo sapiens	HAACCACARN	NYTGTGGTTD	Misc Kulakovskiy et al.(2013) RUNX3_HUMAN.H11MO.0.A	0.762	0.762
Runx3 M09374_2.00	Mus musculus	NHRACCACARVN	NBYTGTGGTYDN	Misc Kulakovskiy et al.(2013) RUNX3_MOUSE.H11MO.0.A	0.762	0.762
RUNX3 M11252_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$AML2_Q3_01	0.762	0.762
RUNX3 M11253_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$AML2_Q3	0.762	0.762
RUNX3 M11254_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$AML2_Q4	0.762	0.762
RUNX3 M05732_2.00	Homo sapiens	HWAACCACRAAAACCACRARN	NYTYGTGGTTTTYGTGGTTWD	SELEX Yin et al.(2017) RUNX3_FL_Methyl-HT-SELEX	0.762	0.762
run M06444_2.00	Drosophila melanogaster	WAACCGCAR	YTGCGGTTW	B1H Zhu et al.(2011) run_Bgb_NBT_FBgn0003300	0.738	0.738
For this family, TFs with SR scores > 0.700* will likely have a similar motif*

DNA Binding Domains

Protein ID	Domain	From	To	Sequence
RPRC005391-PA	Runt	22	151	VCEAQAEHPGELVRTGSPYFLCSALPTHWRSNKTLPVGFKVVALGEVMDGTVVTIRAGNDENYCAELRNCTAIMKNQVAKFNDLRFVGRSGRGKSFTLTITVASCPPQVATYCKAIKVTVDGPREPRSKT

Links
Other Runt family TFs
Other *Rhodnius prolixus* TFs

402 Related TFs

Name	Species	Gene ID	Motif Evidence	SR Score	Action
BGIOSGA034827	Oryza indica	BGIOSGA034827	N	0.000
BGIOSGA034828	Oryza indica	BGIOSGA034828	N	0.000
BGIOSGA037021	Oryza indica	BGIOSGA037021	N	0.000
BRADI4G42120	Brachypodium distachyon	BRADI4G42120	N	0.000
F775_01937	Aegilops tauschii	F775_01937	N	0.000
F775_21880	Aegilops tauschii	F775_21880	N	0.000
GSMUA_Achr5G17460_001	Musa acuminata	GSMUA_Achr5G17460_001	N	0.000
GSMUA_Achr9G02570_001	Musa acuminata	GSMUA_Achr9G02570_001	N	0.000
LPERR11G02970	Leersia perrieri	LPERR11G02970	N	0.000
LPERR12G03230	Leersia perrieri	LPERR12G03230	N	0.000
MLOC_15316	Hordeum vulgare	MLOC_15316	N	0.000
MLOC_22590	Hordeum vulgare	MLOC_22590	N	0.000
OB11G12850	Oryza brachyantha	OB11G12850	N	0.000
OB12G13360	Oryza brachyantha	OB12G13360	N	0.000
OBART11G03540	Oryza barthii	OBART11G03540	N	0.000
OBART12G03450	Oryza barthii	OBART12G03450	N	0.000
OGLUM11G03180	Oryza glumaepatula	OGLUM11G03180	N	0.000
OGLUM12G04120	Oryza glumaepatula	OGLUM12G04120	N	0.000
OLONG_019285	Oryza longistaminata	OLONG_019285	N	0.000
OMERI11G03240	Oryza meridionalis	OMERI11G03240	N	0.000
ONIVA07G22930	Oryza nivara	ONIVA07G22930	N	0.000
ONIVA12G03070	Oryza nivara	ONIVA12G03070	N	0.000
OPUNC11G03240	Oryza punctata	OPUNC11G03240	N	0.000
OPUNC12G03250	Oryza punctata	OPUNC12G03250	N	0.000
ORGLA11G0032900	Oryza glaberrima	ORGLA11G0032900	N	0.000
ORUFI11G03430	Oryza rufipogon	ORUFI11G03430	N	0.000
ORUFI12G03900	Oryza rufipogon	ORUFI12G03900	N	0.000
OS11G0154900	Oryza sativa	OS11G0154900	N	0.000
Pavir.Ca00162	Panicum virgatum	Pavir.Ca00162	N	0.000
Pavir.Cb02058	Panicum virgatum	Pavir.Cb02058	N	0.000
Pavir.Hb01810	Panicum virgatum	Pavir.Hb01810	N	0.000
Pavir.J28001	Panicum virgatum	Pavir.J28001	N	0.000
PK09783.1	Cannabis sativa	PK09783.1	I	0.000
Sb05g003420	Sorghum bicolor	Sb05g003420	N	0.000
Sb08g003500	Sorghum bicolor	Sb08g003500	N	0.000
Si012481m.g	Setaria italica	Si012481m.g	N	0.000
Si026452m.g	Setaria italica	Si026452m.g	N	0.000
Traes_4AL_792F1D482	Triticum aestivum	Traes_4AL_792F1D482	N	0.000
Traes_4BS_8439AC445	Triticum aestivum	Traes_4BS_8439AC445	N	0.000
Traes_4DS_FAFED0328	Triticum aestivum	Traes_4DS_FAFED0328	N	0.000
Traes_5AL_09C375647	Triticum aestivum	Traes_5AL_09C375647	N	0.000
Traes_5BL_6C613A3D9	Triticum aestivum	Traes_5BL_6C613A3D9	N	0.000
Traes_5DL_A528A05A3	Triticum aestivum	Traes_5DL_A528A05A3	N	0.000
TRIUR3_33961	Triticum urartu	TRIUR3_33961	N	0.000

RPRC005391 (Rhodnius prolixus) Runt

TF Information

Directly determined binding motifs

Motifs from related TFs

DNA Binding Domains

Links

402 Related TFs

RPRC005391 **(Rhodnius prolixus)
Runt**