Hsal_12322--XP_394014.2_APIME (Harpegnathos saltator)
Runt

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00853 (Runt) IPR013524 Hsal_12322--XP_394014.2_APIME T319668_2.00 GigaDB (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
lz
M03964_2.00 		Drosophila melanogaster
HRACCGCAAHM
KDTTGCGGTYD		 SELEX
Nitta et al.(2015)
lz_1 		0.815 0.815
lz
M03965_2.00 		Drosophila melanogaster
HVACCRCARWAACCRCAV
BTGYGGTTWYTGYGGTBD		 SELEX
Nitta et al.(2015)
lz_2 		0.815 0.815
lz
M03966_2.00 		Drosophila melanogaster
WRACCRCAWTAACCRCAA
TTGYGGTTAWTGYGGTYW		 SELEX
Nitta et al.(2015)
lz_3 		0.815 0.815
lz
M03967_2.00 		Drosophila melanogaster
HRACCGCAAAACCRCAR
YTGYGGTTTTGCGGTYD		 SELEX
Nitta et al.(2015)
lz_4 		0.815 0.815
Runx2
M01307_2.00 		Mus musculus
NHDACCRCAN
NTGYGGTHDN		 PBM
Lambert et al.(2019)
pTH9764 		0.762 0.762
RUNX2
M03468_2.00 		Homo sapiens
HRACCGCAAACCRCRD
HYGYGGTTTGCGGTYD		 SELEX
Jolma et al.(2013)
RUNX2_1 		0.762 0.762
RUNX2
M03469_2.00 		Homo sapiens
HRACCRCADWWACCRCAD
HTGYGGTWWHTGYGGTYD		 SELEX
Jolma et al.(2013)
RUNX2_2 		0.762 0.762
RUNX2
M03470_2.00 		Homo sapiens
WAACCRCAR
YTGYGGTTW		 SELEX
Jolma et al.(2013)
RUNX2_3 		0.762 0.762
RUNX2
M05733_2.00 		Homo sapiens
NHRACCRCADWAACCRCAVN
NBTGYGGTTWHTGYGGTYDN		 SELEX
Yin et al.(2017)
RUNX2_eDBD_HT-SELEX 		0.762 0.762
Runx1
M08163_2.00 		Mus musculus
HRRCCACARVN
NBYTGTGGYYD		 ChIP-seq
Mathelier et al.(2014)
MA0002.2 		0.762 0.762
RUNX1
M09371_2.00 		Homo sapiens
NWAACCACARV
BYTGTGGTTWN		 Misc
Kulakovskiy et al.(2013)
RUNX1_HUMAN.H11MO.0.A 		0.762 0.762
RUNX2
M09370_2.00 		Homo sapiens
MMHAACCACAVVMH
DKBBTGTGGTTDKK		 Misc
Kulakovskiy et al.(2013)
RUNX2_HUMAN.H11MO.0.A 		0.762 0.762
Runx1
M09372_2.00 		Mus musculus
VWRACCACARVV
BBYTGTGGTYWB		 Misc
Kulakovskiy et al.(2013)
RUNX1_MOUSE.H11MO.0.A 		0.762 0.762
Runx2
M09373_2.00 		Mus musculus
VWRACCACARVV
BBYTGTGGTYWB		 Misc
Kulakovskiy et al.(2013)
RUNX2_MOUSE.H11MO.0.A 		0.762 0.762
RUNX1
M09632_2.00 		Homo sapiens
HAACCACADV
BHTGTGGTTD		 Misc
Heinz et al.(2010)
Jurkat-RUNX1_GSE29180 		0.762 0.762
RUNX1
M09631_2.00 		Homo sapiens
VCCACWTCCTBY
RVAGGAWGTGGB		 Misc
Heinz et al.(2010)
Jurkat-RUNX1_GSE17954 		0.762 0.762
RUNX2
M09630_2.00 		Homo sapiens
NHVACCACANNN
NNNTGTGGTBDN		 Misc
Heinz et al.(2010)
PCa-RUNX2_GSE33889 		0.762 0.762
Runx1
M09633_2.00 		Mus musculus
NWAACCACAR
YTGTGGTTWN		 Misc
Heinz et al.(2010)
HPC7-Runx1_GSE22178 		0.762 0.762
RUNX1
M11258_2.00 		Homo sapiens
ACCRCA
TGYGGT		 Transfac
Matys et al.(2006)
V$AML1_01 		0.762 0.762
RUNX1
M11259_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$AML1_Q4_01 		0.762 0.762
RUNX1
M11260_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$AML1_Q4_02 		0.762 0.762
RUNX1
M11261_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$AML1_Q4 		0.762 0.762
RUNX1
M11262_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$AML1_Q5 		0.762 0.762
RUNX1
M11263_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$AML1_Q6 		0.762 0.762
RUNX2
M11255_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$AML3_Q3 		0.762 0.762
RUNX2
M11256_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$AML3_Q6 		0.762 0.762
RUNX2
M11257_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$OSF2_Q6 		0.762 0.762
RUNX2
M05734_2.00 		Homo sapiens
NWAACCACRAAAACCACRRN
NYYGTGGTTTTYGTGGTTWN		 SELEX
Yin et al.(2017)
RUNX2_eDBD_Methyl-HT-SELEX 		0.762 0.762
RUNX3
M03464_2.00 		Homo sapiens
HRACCGCAAACCRCAN
NTGYGGTTTGCGGTYD		 SELEX
Jolma et al.(2013)
RUNX3_1 		0.754 0.754
RUNX3
M03465_2.00 		Homo sapiens
WAACCRCARN
NYTGYGGTTW		 SELEX
Jolma et al.(2013)
RUNX3_2 		0.754 0.754
RUNX3
M03466_2.00 		Homo sapiens
HDACCRCADWAACCRCRN
NYGYGGTTWHTGYGGTHD		 SELEX
Jolma et al.(2013)
RUNX3_3 		0.754 0.754
RUNX3
M03467_2.00 		Homo sapiens
HRACCRCAAH
DTTGYGGTYD		 SELEX
Jolma et al.(2013)
RUNX3_4 		0.754 0.754
RUNX3
M02751_2.00 		Homo sapiens
WACCRCAM
KTGYGGTW		 SELEX
Jolma et al.(2010)
RUNX3_monomer 		0.754 0.754
RUNX3
M05731_2.00 		Homo sapiens
YWAACCGCAAAAACCGCARV
BYTGCGGTTTTTGCGGTTWR		 SELEX
Yin et al.(2017)
RUNX3_FL_HT-SELEX 		0.754 0.754
RUNX3
M09369_2.00 		Homo sapiens
HAACCACARN
NYTGTGGTTD		 Misc
Kulakovskiy et al.(2013)
RUNX3_HUMAN.H11MO.0.A 		0.754 0.754
Runx3
M09374_2.00 		Mus musculus
NHRACCACARVN
NBYTGTGGTYDN		 Misc
Kulakovskiy et al.(2013)
RUNX3_MOUSE.H11MO.0.A 		0.754 0.754
RUNX3
M11252_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$AML2_Q3_01 		0.754 0.754
RUNX3
M11253_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$AML2_Q3 		0.754 0.754
RUNX3
M11254_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$AML2_Q4 		0.754 0.754
RUNX3
M05732_2.00 		Homo sapiens
HWAACCACRAAAACCACRARN
NYTYGTGGTTTTYGTGGTTWD		 SELEX
Yin et al.(2017)
RUNX3_FL_Methyl-HT-SELEX 		0.754 0.754
run
M06444_2.00 		Drosophila melanogaster
WAACCGCAR
YTGCGGTTW		 B1H
Zhu et al.(2011)
run_Bgb_NBT_FBgn0003300 		0.715 0.715
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Hsal_12322--XP_394014.2_APIME Runt 90 219

Links

Other Runt family TFs
Other Harpegnathos saltator TFs

291 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
BGIOSGA025747 Oryza indica BGIOSGA025747 N 0.000
BGIOSGA031062 Oryza indica BGIOSGA031062 N 0.000
BGIOSGA037778 Oryza indica BGIOSGA037778 N 0.000
BRADI3G41470 Brachypodium distachyon BRADI3G41470 N 0.000
BRADI4G02060 Brachypodium distachyon BRADI4G02060 N 0.000
BRADI4G34800 Brachypodium distachyon BRADI4G34800 N 0.000
Ca_22941 Cicer arietinum Ca_22941 N 0.000
F775_31820 Aegilops tauschii F775_31820 N 0.000
GRMZM2G054252 Zea mays GRMZM2G054252 N 0.000
GRMZM2G054277 Zea mays GRMZM2G054277 N 0.000
GRMZM2G100583 Zea mays GRMZM2G100583 N 0.000
GRMZM2G114850 Zea mays GRMZM2G114850 N 0.000
GRMZM2G179049 Zea mays GRMZM2G179049 N 0.000
LPERR01G22040 Leersia perrieri LPERR01G22040 N 0.000
LPERR08G18520 Leersia perrieri LPERR08G18520 N 0.000
LPERR09G12100 Leersia perrieri LPERR09G12100 N 0.000
LPERR12G15510 Leersia perrieri LPERR12G15510 N 0.000
Lus10014342.g Linum usitatissimum Lus10014342.g N 0.000
MLOC_55957 Hordeum vulgare MLOC_55957 N 0.000
MLOC_64240 Hordeum vulgare MLOC_64240 N 0.000
OB09G22520 Oryza brachyantha OB09G22520 N 0.000
OB12G25170 Oryza brachyantha OB12G25170 N 0.000
OBART09G15890 Oryza barthii OBART09G15890 N 0.000
OBART12G18490 Oryza barthii OBART12G18490 N 0.000
OGLUM02G04830 Oryza glumaepatula OGLUM02G04830 N 0.000
OGLUM07G14740 Oryza glumaepatula OGLUM07G14740 N 0.000
OGLUM09G16460 Oryza glumaepatula OGLUM09G16460 N 0.000
OGLUM12G20140 Oryza glumaepatula OGLUM12G20140 N 0.000
OLONG_012578 Oryza longistaminata OLONG_012578 N 0.000
OMERI06G13840 Oryza meridionalis OMERI06G13840 N 0.000
OMERI07G09680 Oryza meridionalis OMERI07G09680 N 0.000
OMERI07G11790 Oryza meridionalis OMERI07G11790 N 0.000
OMERI09G11810 Oryza meridionalis OMERI09G11810 N 0.000
OMERI12G13180 Oryza meridionalis OMERI12G13180 N 0.000
ONIVA07G09980 Oryza nivara ONIVA07G09980 N 0.000
ONIVA07G13650 Oryza nivara ONIVA07G13650 N 0.000
ONIVA09G17010 Oryza nivara ONIVA09G17010 N 0.000
ONIVA12G17390 Oryza nivara ONIVA12G17390 N 0.000
OPUNC09G14320 Oryza punctata OPUNC09G14320 N 0.000
ORGLA07G0123600 Oryza glaberrima ORGLA07G0123600 N 0.000
ORGLA09G0123200 Oryza glaberrima ORGLA09G0123200 N 0.000
ORGLA12G0157500 Oryza glaberrima ORGLA12G0157500 N 0.000
ORUFI07G15560 Oryza rufipogon ORUFI07G15560 N 0.000
ORUFI09G17170 Oryza rufipogon ORUFI09G17170 N 0.000
ORUFI12G20640 Oryza rufipogon ORUFI12G20640 N 0.000
OS09G0509100 Oryza sativa OS09G0509100 N 0.000
OS12G0610600 Oryza sativa OS12G0610600 N 0.000
Pavir.Ca02777 Panicum virgatum Pavir.Ca02777 N 0.000
Pavir.J04931 Panicum virgatum Pavir.J04931 N 0.000
Pavir.J11699 Panicum virgatum Pavir.J11699 N 0.000
Pavir.J23083 Panicum virgatum Pavir.J23083 N 0.000
Pavir.J24268 Panicum virgatum Pavir.J24268 N 0.000
Sb05g008290 Sorghum bicolor Sb05g008290 N 0.000
Sb08g021080 Sorghum bicolor Sb08g021080 N 0.000
SELMODRAFT_69130 Selaginella moellendorffii SELMODRAFT_69130 N 0.000
SELMODRAFT_69131 Selaginella moellendorffii SELMODRAFT_69131 N 0.000
Si014408m.g Setaria italica Si014408m.g N 0.000
Si022747m.g Setaria italica Si022747m.g N 0.000
Si030942m.g Setaria italica Si030942m.g N 0.000
Solyc07g066330.2 Solanum lycopersicum Solyc07g066330.2 N 0.000
Traes_5AS_E5FD82E36 Triticum aestivum Traes_5AS_E5FD82E36 N 0.000
Traes_5BL_456C3408A Triticum aestivum Traes_5BL_456C3408A N 0.000
Traes_5BS_9F043AE17 Triticum aestivum Traes_5BS_9F043AE17 N 0.000
Traes_5DL_36AE1EF2B Triticum aestivum Traes_5DL_36AE1EF2B N 0.000
TRIUR3_03598 Triticum urartu TRIUR3_03598 N 0.000