runx2 (Xenopus tropicalis)
Runt

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00853 (Runt) IPR013524 XB-GENE-482021 T319705_2.00 Misc (2018-Jan-19)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Runx2
M01307_2.00 		Mus musculus
NHDACCRCAN
NTGYGGTHDN		 PBM
Lambert et al.(2019)
pTH9764 		0.962 0.962
RUNX2
M03468_2.00 		Homo sapiens
HRACCGCAAACCRCRD
HYGYGGTTTGCGGTYD		 SELEX
Jolma et al.(2013)
RUNX2_1 		0.962 0.962
RUNX2
M03469_2.00 		Homo sapiens
HRACCRCADWWACCRCAD
HTGYGGTWWHTGYGGTYD		 SELEX
Jolma et al.(2013)
RUNX2_2 		0.962 0.962
RUNX2
M03470_2.00 		Homo sapiens
WAACCRCAR
YTGYGGTTW		 SELEX
Jolma et al.(2013)
RUNX2_3 		0.962 0.962
RUNX2
M05733_2.00 		Homo sapiens
NHRACCRCADWAACCRCAVN
NBTGYGGTTWHTGYGGTYDN		 SELEX
Yin et al.(2017)
RUNX2_eDBD_HT-SELEX 		0.962 0.962
RUNX2
M09370_2.00 		Homo sapiens
MMHAACCACAVVMH
DKBBTGTGGTTDKK		 Misc
Kulakovskiy et al.(2013)
RUNX2_HUMAN.H11MO.0.A 		0.962 0.962
Runx2
M09373_2.00 		Mus musculus
VWRACCACARVV
BBYTGTGGTYWB		 Misc
Kulakovskiy et al.(2013)
RUNX2_MOUSE.H11MO.0.A 		0.962 0.962
RUNX2
M09630_2.00 		Homo sapiens
NHVACCACANNN
NNNTGTGGTBDN		 Misc
Heinz et al.(2010)
PCa-RUNX2_GSE33889 		0.962 0.962
RUNX2
M11255_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$AML3_Q3 		0.962 0.962
RUNX2
M11256_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$AML3_Q6 		0.962 0.962
RUNX2
M11257_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$OSF2_Q6 		0.962 0.962
RUNX2
M05734_2.00 		Homo sapiens
NWAACCACRAAAACCACRRN
NYYGTGGTTTTYGTGGTTWN		 SELEX
Yin et al.(2017)
RUNX2_eDBD_Methyl-HT-SELEX 		0.962 0.962
RUNX3
M03464_2.00 		Homo sapiens
HRACCGCAAACCRCAN
NTGYGGTTTGCGGTYD		 SELEX
Jolma et al.(2013)
RUNX3_1 		0.908 0.908
RUNX3
M03465_2.00 		Homo sapiens
WAACCRCARN
NYTGYGGTTW		 SELEX
Jolma et al.(2013)
RUNX3_2 		0.908 0.908
RUNX3
M03466_2.00 		Homo sapiens
HDACCRCADWAACCRCRN
NYGYGGTTWHTGYGGTHD		 SELEX
Jolma et al.(2013)
RUNX3_3 		0.908 0.908
RUNX3
M03467_2.00 		Homo sapiens
HRACCRCAAH
DTTGYGGTYD		 SELEX
Jolma et al.(2013)
RUNX3_4 		0.908 0.908
RUNX3
M02751_2.00 		Homo sapiens
WACCRCAM
KTGYGGTW		 SELEX
Jolma et al.(2010)
RUNX3_monomer 		0.908 0.908
RUNX3
M05731_2.00 		Homo sapiens
YWAACCGCAAAAACCGCARV
BYTGCGGTTTTTGCGGTTWR		 SELEX
Yin et al.(2017)
RUNX3_FL_HT-SELEX 		0.908 0.908
RUNX3
M09369_2.00 		Homo sapiens
HAACCACARN
NYTGTGGTTD		 Misc
Kulakovskiy et al.(2013)
RUNX3_HUMAN.H11MO.0.A 		0.908 0.908
Runx3
M09374_2.00 		Mus musculus
NHRACCACARVN
NBYTGTGGTYDN		 Misc
Kulakovskiy et al.(2013)
RUNX3_MOUSE.H11MO.0.A 		0.908 0.908
RUNX3
M11252_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$AML2_Q3_01 		0.908 0.908
RUNX3
M11253_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$AML2_Q3 		0.908 0.908
RUNX3
M11254_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$AML2_Q4 		0.908 0.908
RUNX3
M05732_2.00 		Homo sapiens
HWAACCACRAAAACCACRARN
NYTYGTGGTTTTYGTGGTTWD		 SELEX
Yin et al.(2017)
RUNX3_FL_Methyl-HT-SELEX 		0.908 0.908
Runx1
M08163_2.00 		Mus musculus
HRRCCACARVN
NBYTGTGGYYD		 ChIP-seq
Mathelier et al.(2014)
MA0002.2 		0.885 0.885
RUNX1
M09371_2.00 		Homo sapiens
NWAACCACARV
BYTGTGGTTWN		 Misc
Kulakovskiy et al.(2013)
RUNX1_HUMAN.H11MO.0.A 		0.885 0.885
Runx1
M09372_2.00 		Mus musculus
VWRACCACARVV
BBYTGTGGTYWB		 Misc
Kulakovskiy et al.(2013)
RUNX1_MOUSE.H11MO.0.A 		0.885 0.885
RUNX1
M09632_2.00 		Homo sapiens
HAACCACADV
BHTGTGGTTD		 Misc
Heinz et al.(2010)
Jurkat-RUNX1_GSE29180 		0.885 0.885
RUNX1
M09631_2.00 		Homo sapiens
VCCACWTCCTBY
RVAGGAWGTGGB		 Misc
Heinz et al.(2010)
Jurkat-RUNX1_GSE17954 		0.885 0.885
Runx1
M09633_2.00 		Mus musculus
NWAACCACAR
YTGTGGTTWN		 Misc
Heinz et al.(2010)
HPC7-Runx1_GSE22178 		0.885 0.885
RUNX1
M11258_2.00 		Homo sapiens
ACCRCA
TGYGGT		 Transfac
Matys et al.(2006)
V$AML1_01 		0.885 0.885
RUNX1
M11259_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$AML1_Q4_01 		0.885 0.885
RUNX1
M11260_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$AML1_Q4_02 		0.885 0.885
RUNX1
M11261_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$AML1_Q4 		0.885 0.885
RUNX1
M11262_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$AML1_Q5 		0.885 0.885
RUNX1
M11263_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$AML1_Q6 		0.885 0.885
lz
M03964_2.00 		Drosophila melanogaster
HRACCGCAAHM
KDTTGCGGTYD		 SELEX
Nitta et al.(2015)
lz_1 		0.700 0.700
lz
M03965_2.00 		Drosophila melanogaster
HVACCRCARWAACCRCAV
BTGYGGTTWYTGYGGTBD		 SELEX
Nitta et al.(2015)
lz_2 		0.700 0.700
lz
M03966_2.00 		Drosophila melanogaster
WRACCRCAWTAACCRCAA
TTGYGGTTAWTGYGGTYW		 SELEX
Nitta et al.(2015)
lz_3 		0.700 0.700
lz
M03967_2.00 		Drosophila melanogaster
HRACCGCAAAACCRCAR
YTGYGGTTTTGCGGTYD		 SELEX
Nitta et al.(2015)
lz_4 		0.700 0.700
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
BAG69611 Runt 76 205

Links

Other Runt family TFs
Other Xenopus tropicalis TFs

272 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Aan_R004657 Calypte anna Aan_R004657 I
ACYPI005198 Acyrthosiphon pisum ACYPI005198 I
Afo_R002778 Aptenodytes forsteri Afo_R002778 I
Alligator_sinensis_CCG019430.1 Alligator sinensis Alligator_sinensis_CCG019430.1 I
Brh_R004607 Buceros rhinoceros Brh_R004607 I
Cmyd_10006239 Chelonia mydas Cmyd_10006239 I
EFV61981 Trichinella spiralis EFV61981 I
MXD1 Anolis carolinensis ENSACAG00000006004 I
MXI1 Anolis carolinensis ENSACAG00000006009 I
ENSAMEG00000005262 Ailuropoda melanoleuca ENSAMEG00000005262 I
ENSAMEG00000016108 Ailuropoda melanoleuca ENSAMEG00000016108 I
ENSAMXG00000004433 Astyanax mexicanus ENSAMXG00000004433 I
ENSAPLG00000004350 Anas platyrhynchos ENSAPLG00000004350 I
MXD1 Bos taurus ENSBTAG00000001042 I
MXI1 Bos taurus ENSBTAG00000017263 I
ENSBTAP00000048182-D1 Bos grunniens ENSBTAP00000048182-D1 I
MXI1 Canis familiaris ENSCAFG00000010706 I
MXD1 Canis familiaris ENSCAFG00000032746 I
MXD1 Choloepus hoffmanni ENSCHOG00000003047 I
MXI1 Choloepus hoffmanni ENSCHOG00000006556 I
MXI1 Callithrix jacchus ENSCJAG00000018614 I
MXD1 Callithrix jacchus ENSCJAG00000019266 I
ENSCPOG00000000336 Cavia porcellus ENSCPOG00000000336 I
ENSCPOG00000007162 Cavia porcellus ENSCPOG00000007162 I
MXI1 Cavia porcellus ENSCPOG00000022901 I
ENSCSAG00000005171 Chlorocebus sabaeus ENSCSAG00000005171 I
ENSCSAG00000015119 Chlorocebus sabaeus ENSCSAG00000015119 I
mxi1 Danio rerio ENSDARG00000040884 I
MXI1 Dasypus novemcinctus ENSDNOG00000002479 I
MXD1 Dasypus novemcinctus ENSDNOG00000034010 I
ENSDORG00000001608 Dipodomys ordii ENSDORG00000001608 I
Mxi1 Dipodomys ordii ENSDORG00000005656 I
MXD1 Equus caballus ENSECAG00000011257 I
MXD1 Echinops telfairi ENSETEG00000017347 I
MXI1 Echinops telfairi ENSETEG00000018880 I
ENSFALG00000002308 Ficedula albicollis ENSFALG00000002308 I
MXI1 Felis catus ENSFCAG00000004882 I
MXD1 Felis catus ENSFCAG00000030345 I
MXD1 Homo sapiens ENSG00000059728 I
MXI1 Homo sapiens ENSG00000119950 D
mxd1 Gasterosteus aculeatus ENSGACG00000013215 I
ENSGACG00000018716 Gasterosteus aculeatus ENSGACG00000018716 I
MXI1 Gallus gallus ENSGALG00000008555 I
MXD1 Gallus gallus ENSGALG00000013882 I
MXD1 Gorilla gorilla ENSGGOG00000011287 I
MXI1 Gorilla gorilla ENSGGOG00000013614 I
ENSGMOG00000014798 Gadus morhua ENSGMOG00000014798 I
ENSLACG00000017438 Latimeria chalumnae ENSLACG00000017438 I
MXI1 Loxodonta africana ENSLAFG00000014348 I
ENSLOCG00000012358 Lepisosteus oculatus ENSLOCG00000012358 I
ENSLOCG00000015320 Lepisosteus oculatus ENSLOCG00000015320 I
ENSMEUG00000013693 Macropus eugenii ENSMEUG00000013693 I
MXD1 Meleagris gallopavo ENSMGAG00000003405 I
MXI1 Meleagris gallopavo ENSMGAG00000010768 I
ENSMMUG00000010226 Macaca mulatta ENSMMUG00000010226 I
MXI1 Macaca mulatta ENSMMUG00000014350 I
MXI1 Monodelphis domestica ENSMODG00000010546 I
MXD1 Monodelphis domestica ENSMODG00000011481 I
ENSMPUG00000002095 Mustela putorius furo ENSMPUG00000002095 I
ENSMPUG00000007107 Mustela putorius furo ENSMPUG00000007107 I
Mxd1 Mus musculus ENSMUSG00000001156 I
Mxi1 Mus musculus ENSMUSG00000025025 D
ENSNLEG00000010141 Nomascus leucogenys ENSNLEG00000010141 I
ENSNLEG00000015457 Nomascus leucogenys ENSNLEG00000015457 I
MXI1 Ornithorhynchus anatinus ENSOANG00000001600 I
ENSOARG00000009456 Ovis aries ENSOARG00000009456 I
ENSOARG00000019742 Ovis aries ENSOARG00000019742 I
MXD1 Oryctolagus cuniculus ENSOCUG00000015820 I
MXI1 Otolemur garnettii ENSOGAG00000000570 I
MXD1 Otolemur garnettii ENSOGAG00000008412 I
ENSONIG00000000432 Oreochromis niloticus ENSONIG00000000432 I
ENSONIG00000015871 Oreochromis niloticus ENSONIG00000015871 I
ENSONIG00000016308 Oreochromis niloticus ENSONIG00000016308 I
MXI1 Oryzias latipes ENSORLG00000005955 I
mxi1 Oryzias latipes ENSORLG00000015172 I
mxd1 Oryzias latipes ENSORLG00000015461 I
ENSP00000264444 Macaca fascicularis ENSP00000264444 I
ENSP00000264444-D1 Bos grunniens ENSP00000264444-D1 I
ENSP00000331152 Macaca fascicularis ENSP00000331152 I
ENSPANG00000000314 Papio anubis ENSPANG00000000314 I
ENSPANG00000020804 Papio anubis ENSPANG00000020804 I
MXD1 Procavia capensis ENSPCAG00000001189 I
MXI1 Procavia capensis ENSPCAG00000016142 I
ENSPFOG00000004367 Poecilia formosa ENSPFOG00000004367 I
ENSPFOG00000017086 Poecilia formosa ENSPFOG00000017086 I
ENSPFOG00000021922 Poecilia formosa ENSPFOG00000021922 I
ENSPMAG00000001074 Petromyzon marinus ENSPMAG00000001074 I
ENSPPYG00000012331 Pongo abelii ENSPPYG00000012331 I
ENSPSIG00000012742 Pelodiscus sinensis ENSPSIG00000012742 I
MXI1 Pan troglodytes ENSPTRG00000002936 I
MXD1 Pan troglodytes ENSPTRG00000012023 I
MXD1 Pteropus vampyrus ENSPVAG00000001244 I
MXI1 Pteropus vampyrus ENSPVAG00000014983 I
Mxd1 Rattus norvegicus ENSRNOG00000017720 I
Mxi1 Rattus norvegicus ENSRNOG00000034078 I
MXD1 Sorex araneus ENSSARG00000004728 I
ENSSHAG00000005374 Sarcophilus harrisii ENSSHAG00000005374 I
MXD1 Sus scrofa ENSSSCG00000008334 I
ENSSTOG00000000718 Ictidomys tridecemlineatus ENSSTOG00000000718 I
ENSSTOG00000025776 Ictidomys tridecemlineatus ENSSTOG00000025776 I
MXD1 Tupaia belangeri ENSTBEG00000005535 I
ENSTBEG00000017602 Tupaia belangeri ENSTBEG00000017602 I
ENSTGUG00000010598 Taeniopygia guttata ENSTGUG00000010598 I
ENSTGUG00000015302 Taeniopygia guttata ENSTGUG00000015302 I
mxd1 Tetraodon nigroviridis ENSTNIG00000000414 I
mxi1 Tetraodon nigroviridis ENSTNIG00000010585 I
MXI1 Tetraodon nigroviridis ENSTNIG00000013330 I
MXI1 Takifugu rubripes ENSTRUG00000006785 I
ENSTSYG00000006623 Tarsius syrichta ENSTSYG00000006623 I
MXI1 Tursiops truncatus ENSTTRG00000007895 I
MXD1 Vicugna pacos ENSVPAG00000001762 I
MXI1 Vicugna pacos ENSVPAG00000003400 I
ENSXMAG00000004566 Xiphophorus maculatus ENSXMAG00000004566 I
ENSXMAG00000007056 Xiphophorus maculatus ENSXMAG00000007056 I
ENSXMAG00000012758 Xiphophorus maculatus ENSXMAG00000012758 I
fgenesh2_pg.scaffold_205000025 Branchiostoma floridae fgenesh2_pg.scaffold_205000025 I
Gfo_R002259 Geospiza fortis Gfo_R002259 I
LotgiG220594 Lottia gigantea LotgiG220594 I
Myotis_brandtii_Mxi1_10027965 Myotis brandtii Myotis_brandtii_Mxi1_10027965 I
NV10716 Nasonia vitripennis NV10716 I
Ogr05439 Ophisaurus gracilis Ogr05439 I
Ogr11151 Ophisaurus gracilis Ogr11151 I
Pvit_06637 Pogona vitticeps Pvit_06637 I
Pvit_07222 Pogona vitticeps Pvit_07222 I
RPRC006485 Rhodnius prolixus RPRC006485 I
Sakowv30007563m.g Saccoglossus kowalevskii Sakowv30007563m.g I
SPU_006583 Strongylocentrotus purpuratus SPU_006583 I
Tal_R006513 Tyto alba Tal_R006513 I
tetur09g05570 Tetranychus urticae tetur09g05570 I
mxi1 Xenopus tropicalis XB-GENE-493086 I
mxi1.L Xenopus laevis XB-GENE-865794 I