Bo3g092260 (Brassica oleracea)
RWP-RK

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF02042 (RWP-RK) IPR003035 Bo3g092260 T319924_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
NLP4
M07248_2.00 		Arabidopsis thaliana
NNHNNBTGCTGYHNN
NNDRCAGCAVNNDNN		 Dap-seq
OMalley et al.(2016)
AtNLP4_col_b 		0.857 0.857
NLP7
M07251_2.00 		Arabidopsis thaliana
WNDTGNCYYTTSRDD
HHYSAARRGNCAHNW		 Dap-seq
OMalley et al.(2016)
NLP7_col_a 		0.837 0.837
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Bo3g092260.1 RWP-RK 599 647

Links

Other RWP-RK family TFs
Other Brassica oleracea TFs

414 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
29623.m000322 Ricinus communis 29623.m000322 I 0.898
29812.m000200 Ricinus communis 29812.m000200 I 0.878
30170.m014365 Ricinus communis 30170.m014365 I 0.878
Al_scaffold_0003_3669 Arabidopsis lyrata Al_scaffold_0003_3669 I 0.918
AMTR_s00058p00147810 Amborella trichopoda AMTR_s00058p00147810 I 0.857
Aquca_015_00363 Aquilegia coerulea Aquca_015_00363 I 0.878
NLP4 Arabidopsis thaliana AT1G20640 D 0.857
NLP5 Arabidopsis thaliana AT1G76350 I 0.878
NLP1 Arabidopsis thaliana AT2G17150 I 0.918
NLP2 Arabidopsis thaliana AT4G35270 I 0.939
BGIOSGA031219 Oryza indica BGIOSGA031219 I 0.837
Bo5g030540 Brassica oleracea Bo5g030540 I 0.878
Bo6g120380 Brassica oleracea Bo6g120380 I 0.878
Bo7g014920 Brassica oleracea Bo7g014920 I 0.939
Bo7g061470 Brassica oleracea Bo7g061470 I 0.878
Bo7g117300 Brassica oleracea Bo7g117300 I 0.918
Bo8g070310 Brassica oleracea Bo8g070310 I 0.837
Bostr.18351s0175 Boechera stricta Bostr.18351s0175 I 0.898
Bostr.20129s0072 Boechera stricta Bostr.20129s0072 I 0.878
Bostr.7128s0657 Boechera stricta Bostr.7128s0657 I 0.857
Bostr.7867s1388 Boechera stricta Bostr.7867s1388 I 0.939
Bra002025 Brassica rapa Bra002025 I 0.939
Bra009659 Brassica rapa Bra009659 I 1.000
Bra011600 Brassica rapa Bra011600 I 0.939
Bra012241 Brassica rapa Bra012241 I 0.878
Bra015758 Brassica rapa Bra015758 I 0.878
Bra016458 Brassica rapa Bra016458 I 0.837
Bra017705 Brassica rapa Bra017705 I 0.918
Bra025834 Brassica rapa Bra025834 I 0.878
Cagra.0799s0105 Capsella grandiflora Cagra.0799s0105 I 0.898
Cagra.0805s0015 Capsella grandiflora Cagra.0805s0015 I 0.898
Cagra.2350s0071 Capsella grandiflora Cagra.2350s0071 I 0.939
Cagra.6160s0032 Capsella grandiflora Cagra.6160s0032 I 0.857
Carubv10004068m.g Capsella rubella Carubv10004068m.g I 0.918
Carubv10008300m.g Capsella rubella Carubv10008300m.g I 0.857
Carubv10012927m.g Capsella rubella Carubv10012927m.g I 0.898
Carubv10019812m.g Capsella rubella Carubv10019812m.g I 0.898
cassava18621.valid.m1 Manihot esculenta cassava18621.valid.m1 I 0.878
cassava42764.valid.m1 Manihot esculenta cassava42764.valid.m1 I 0.878
cassava43767.valid.m1 Manihot esculenta cassava43767.valid.m1 I 0.857
Ca_09832 Cicer arietinum Ca_09832 I 0.898
chr2.CM0102.390.nc Lotus japonicus chr2.CM0102.390.nc I 0.898
Ciclev10027765m.g Citrus clementina Ciclev10027765m.g I 0.898
Cla023812 Citrullus lanatus Cla023812 I 0.878
Cucsa.272130 Cucumis sativus Cucsa.272130 I 0.878
estExt_Genewise1.C_2500013 Physcomitrella patens estExt_Genewise1.C_2500013 I 0.898
estExt_Genewise1.C_260189 Physcomitrella patens estExt_Genewise1.C_260189 I 0.898
estExt_gwp_gw1.C_1280044 Physcomitrella patens estExt_gwp_gw1.C_1280044 I 0.898
Eucgr.I01519 Eucalyptus grandis Eucgr.I01519 I 0.878
evm.TU.supercontig_26.186 Carica papaya evm.TU.supercontig_26.186 I 0.878
fgenesh2_kg.1__2251__AT1G20640.2 Arabidopsis lyrata fgenesh2_kg.1__2251__AT1G20640.2 I 0.857
fgenesh2_kg.2__1918__AT1G76350.1 Arabidopsis lyrata fgenesh2_kg.2__1918__AT1G76350.1 I 0.878
fgenesh2_kg.7__555__AT4G35270.1 Arabidopsis lyrata fgenesh2_kg.7__555__AT4G35270.1 I 0.918
GLYMA02G48080 Glycine max GLYMA02G48080 I 0.898
GLYMA04G00210 Glycine max GLYMA04G00210 I 0.898
GLYMA04G01910 Glycine max GLYMA04G01910 I 0.837
GLYMA06G00240 Glycine max GLYMA06G00240 I 0.898
GLYMA06G02030 Glycine max GLYMA06G02030 I 0.837
GLYMA14G00470 Glycine max GLYMA14G00470 I 0.898
Gorai.002G115800 Gossypium raimondii Gorai.002G115800 I 0.857
Gorai.002G206700 Gossypium raimondii Gorai.002G206700 I 0.939
Gorai.005G259100 Gossypium raimondii Gorai.005G259100 I 0.857
Gorai.008G041100 Gossypium raimondii Gorai.008G041100 I 0.898
GRMZM2G048582 Zea mays GRMZM2G048582 I 0.837
GSMUA_Achr3G14760_001 Musa acuminata GSMUA_Achr3G14760_001 I 0.837
gw1.109.16.1 Physcomitrella patens gw1.109.16.1 I 0.898
LPERR09G14430 Leersia perrieri LPERR09G14430 I 0.837
mgf013792m Mimulus guttatus mgf013792m I 0.878
MTR_3g115400 Medicago truncatula MTR_3g115400 I 0.837
MTR_5g099060 Medicago truncatula MTR_5g099060 I 0.898
OB09G25360 Oryza brachyantha OB09G25360 I 0.837
OBART09G18730 Oryza barthii OBART09G18730 I 0.837
OGLUM09G19240 Oryza glumaepatula OGLUM09G19240 I 0.837
OLONG_014948 Oryza longistaminata OLONG_014948 I 0.837
OMERI06G03620 Oryza meridionalis OMERI06G03620 I 0.837
ONIVA09G19860 Oryza nivara ONIVA09G19860 I 0.837
OPUNC09G17100 Oryza punctata OPUNC09G17100 I 0.837
orange1.1g004975m.g Citrus sinensis orange1.1g004975m.g I 0.898
ORGLA09G0149200 Oryza glaberrima ORGLA09G0149200 I 0.837
ORUFI09G20290 Oryza rufipogon ORUFI09G20290 I 0.837
OS09G0549450 Oryza sativa OS09G0549450 I 0.837
PGSC0003DMG400009909 Solanum tuberosum PGSC0003DMG400009909 I 0.898
PK12462.1 Cannabis sativa PK12462.1 I 0.878
PK27147.1 Cannabis sativa PK27147.1 I 0.857
Pm020817 Prunus mume Pm020817 I 0.898
POPTR_0002s01060 Populus trichocarpa POPTR_0002s01060 I 0.878
POPTR_0004s21550 Populus trichocarpa POPTR_0004s21550 I 0.898
POPTR_0005s27310 Populus trichocarpa POPTR_0005s27310 I 0.878
POPTR_0009s16790 Populus trichocarpa POPTR_0009s16790 I 0.837
POPTR_0009s16830 Populus trichocarpa POPTR_0009s16830 I 0.898
POPTR_0016s04220 Populus trichocarpa POPTR_0016s04220 I 0.857
PRUPE_ppa018195mg Prunus persica PRUPE_ppa018195mg I 0.878
SapurV1A.0016s0650 Salix purpurea SapurV1A.0016s0650 I 0.878
SapurV1A.0018s0830 Salix purpurea SapurV1A.0018s0830 I 0.857
SapurV1A.0125s0390 Salix purpurea SapurV1A.0125s0390 I 0.898
SapurV1A.0266s0390 Salix purpurea SapurV1A.0266s0390 I 0.878
SapurV1A.0374s0230 Salix purpurea SapurV1A.0374s0230 I 0.857
SapurV1A.3634s0010 Salix purpurea SapurV1A.3634s0010 I 0.857
Sb02g031970 Sorghum bicolor Sb02g031970 I 0.837
Si028915m.g Setaria italica Si028915m.g I 0.837
Solyc01g112190.2 Solanum lycopersicum Solyc01g112190.2 I 0.898
Solyc04g082480.2 Solanum lycopersicum Solyc04g082480.2 I 0.898
TCM_006453 Theobroma cacao TCM_006453 I 0.898
TCM_034391 Theobroma cacao TCM_034391 I 0.857
Thhalv10006790m.g Eutrema salsugineum Thhalv10006790m.g I 0.857
Thhalv10018128m.g Eutrema salsugineum Thhalv10018128m.g I 0.878
Thhalv10022536m.g Eutrema salsugineum Thhalv10022536m.g I 0.939
Thhalv10024319m.g Eutrema salsugineum Thhalv10024319m.g I 0.939
VIT_03s0038g03710 Vitis vinifera VIT_03s0038g03710 I 0.898
VIT_18s0122g01290 Vitis vinifera VIT_18s0122g01290 I 0.898