fgenesh1_pg.C_scaffold_7000014 (Arabidopsis lyrata)
RWP-RK

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF02042 (RWP-RK) IPR003035 fgenesh1_pg.C_scaffold_7000014 T320036_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
NLP4
M07248_2.00 		Arabidopsis thaliana
NNHNNBTGCTGYHNN
NNDRCAGCAVNNDNN		 Dap-seq
OMalley et al.(2016)
AtNLP4_col_b 		0.898 0.898
NLP7
M07251_2.00 		Arabidopsis thaliana
WNDTGNCYYTTSRDD
HHYSAARRGNCAHNW		 Dap-seq
OMalley et al.(2016)
NLP7_col_a 		0.796 0.796
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
fgenesh1_pg.C_scaffold_7000014 RWP-RK 425 473

Links

Other RWP-RK family TFs
Other Arabidopsis lyrata TFs

388 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ARB_06051 Arthroderma benhamiae ARB_06051 N 0.000
BDDG_09732 Blastomyces dermatitidis BDDG_09732 N 0.000
CADAFLAG00008606 Aspergillus flavus CADAFLAG00008606 N 0.000
AFUA_3G04180 Aspergillus fumigatus CADAFUAG00000395 N 0.000
CADANGAG00000009 Aspergillus niger CADANGAG00000009 N 0.000
ANIA_09404 Aspergillus nidulans CADANIAG00001191 N 0.000
ATEG_04261 Aspergillus terreus CADATEAG00008117 N 0.000
NFIA_006450 Neosartorya fischeri CADNFIAG00000439 N 0.000
CIMG_08469 Coccidioides immitis CIMG_08469 N 0.000
CPC735_061390 Coccidioides posadasii CPC735_061390 N 0.000
EURHEDRAFT_504690 Aspergillus ruber EURHEDRAFT_504690 N 0.000
fgenesh1_pm.00771_#_446 Aspergillus carbonarius fgenesh1_pm.00771_#_446 N 0.000
H101_02011 Trichophyton interdigitale H101_02011 N 0.000
MCYG_02778 Arthroderma otae MCYG_02778 N 0.000
MCYG_02778 Microsporum canis MCYG_02778 N 0.000
PAAG_01528 Paracoccidioides sp lutzii PAAG_01528 N 0.000
PABG_03589 Paracoccidioides brasiliensis PABG_03589 N 0.000
Pc14g00700 Penicillium chrysogenum Pc14g00700 N 0.000
PCH_Pc14g00700 Penicillium rubens PCH_Pc14g00700 N 0.000
PDE_01447 Penicillium oxalicum PDE_01447 N 0.000
PDIP_67890 Penicillium digitatum PDIP_67890 N 0.000
PEX1_026530 Penicillium expansum PEX1_026530 N 0.000
PITC_090440 Penicillium italicum PITC_090440 N 0.000
PMAA_005600 Talaromyces marneffei PMAA_005600 N 0.000
PMAA_005600 Penicillium marneffei PMAA_005600 N 0.000
PVAR5_4435 Byssochlamys spectabilis PVAR5_4435 N 0.000
TEQG_04149 Trichophyton equinum TEQG_04149 N 0.000
TRV_08132 Trichophyton verrucosum TRV_08132 N 0.000
TSTA_104200 Talaromyces stipitatus TSTA_104200 N 0.000
U727_00433631421 Penicillium solitum U727_00433631421 N 0.000
UREG_02549 Uncinocarpus reesii UREG_02549 N 0.000