CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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GRMZM2G031398
(
Zea mays
)
RWP-RK
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF02042 (RWP-RK)
IPR003035
GRMZM2G031398
T320100_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
NLP7
M07251_2.00
Arabidopsis thaliana
WNDTGNCYYTTSRDD
HHYSAARRGNCAHNW
Dap-seq
OMalley et al.(2016)
NLP7_col_a
0.816
0.816
NLP4
M07248_2.00
Arabidopsis thaliana
NNHNNBTGCTGYHNN
NNDRCAGCAVNNDNN
Dap-seq
OMalley et al.(2016)
AtNLP4_col_b
0.776
0.776
For this family, TFs with SR scores >
0.700
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
GRMZM2G031398_P01
RWP-RK
729
777
NFSLDVLRKYFSGSLRDAAMSLGVCPTTLKRICRQHGISRWPSRKINKV
GRMZM2G031398_P02
RWP-RK
729
777
NFSLDVLRKYFSGSLRDAAMSLGVCPTTLKRICRQHGISRWPSRKINKV
Links
Other
RWP-RK
family TFs
Other
Zea mays
TFs
416 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
gene31621-v1.0-hybrid
Fragaria vesca
gene31621-v1.0-hybrid
N
Lus10011445.g
Linum usitatissimum
Lus10011445.g
N
Lus10035873.g
Linum usitatissimum
Lus10035873.g
N
Lus10037550.g
Linum usitatissimum
Lus10037550.g
N
MDP0000274723
Malus domestica
MDP0000274723
N
SapurV1A.1429s0020
Salix purpurea
SapurV1A.1429s0020
N
TGA1A
Nicotiana sp.
TGA1A_TOBAC
D
TGA1A_TOBAC
Nicotiana tabacum
TGA1A_TOBAC
D