POPTR_0003s14300 (Populus trichocarpa)
RWP-RK

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF02042 (RWP-RK) IPR003035 POPTR_0003s14300 T320739_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
NLP7
M07251_2.00 		Arabidopsis thaliana
WNDTGNCYYTTSRDD
HHYSAARRGNCAHNW		 Dap-seq
OMalley et al.(2016)
NLP7_col_a 		0.918 0.918
NLP4
M07248_2.00 		Arabidopsis thaliana
NNHNNBTGCTGYHNN
NNDRCAGCAVNNDNN		 Dap-seq
OMalley et al.(2016)
AtNLP4_col_b 		0.837 0.837
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
POPTR_0003s14300.1 RWP-RK 577 625

Links

Other RWP-RK family TFs
Other Populus trichocarpa TFs

419 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
AOL_s00112g130 Arthrobotrys oligospora AOL_s00112g130 N
Bcin06g03110 Botrytis cinerea Bcin06g03110 N
BDDG_09840 Blastomyces dermatitidis BDDG_09840 N
CIMG_09999 Coccidioides immitis CIMG_09999 N
COCC4DRAFT_60425 Bipolaris maydis COCC4DRAFT_60425 N
COCCADRAFT_100611 Bipolaris zeicola COCCADRAFT_100611 N
COCMIDRAFT_87933 Bipolaris oryzae COCMIDRAFT_87933 N
COCSADRAFT_322361 Bipolaris sorokiniana COCSADRAFT_322361 N
COCVIDRAFT_89505 Bipolaris victoriae COCVIDRAFT_89505 N
CPC735_011650 Coccidioides posadasii CPC735_011650 N
GMDG_06933 Pseudogymnoascus destructans GMDG_06933 N
H102_08817 Trichophyton rubrum H102_08817 N
H105_08842 Trichophyton soudanense H105_08842 N
HCBG_02942 Histoplasma capsulatum HCBG_02942 N
MCYG_02975 Microsporum canis MCYG_02975 N
MCYG_02975 Arthroderma otae MCYG_02975 N
MPH_04816 Macrophomina phaseolina MPH_04816 N
OIDMADRAFT_178173 Oidiodendron maius OIDMADRAFT_178173 N
PAAG_04477 Paracoccidioides sp lutzii PAAG_04477 N
PABG_04267 Paracoccidioides brasiliensis PABG_04267 N
PTT_17447 Pyrenophora teres PTT_17447 N
SBOR_3762 Sclerotinia borealis SBOR_3762 N
SETTUDRAFT_101545 Setosphaeria turcica SETTUDRAFT_101545 N
SS1G_02851 Sclerotinia sclerotiorum SS1G_02851 N
TEQG_06658 Trichophyton equinum TEQG_06658 N
UREG_06021 Uncinocarpus reesii UREG_06021 N
V499_01449 Pseudogymnoascus pannorum V499_01449 N
W97_05488 Coniosporium apollinis W97_05488 N