Cagra.2350s0071 (Capsella grandiflora)
RWP-RK

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF02042 (RWP-RK) IPR003035 Cagra.2350s0071 T321080_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
NLP4
M07248_2.00 		Arabidopsis thaliana
NNHNNBTGCTGYHNN
NNDRCAGCAVNNDNN		 Dap-seq
OMalley et al.(2016)
AtNLP4_col_b 		0.918 0.918
NLP7
M07251_2.00 		Arabidopsis thaliana
WNDTGNCYYTTSRDD
HHYSAARRGNCAHNW		 Dap-seq
OMalley et al.(2016)
NLP7_col_a 		0.857 0.857
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Cagra.2350s0071.1.p RWP-RK 649 697
Cagra.2350s0071.2.p RWP-RK 649 697

Links

Other RWP-RK family TFs
Other Capsella grandiflora TFs

415 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ARB_04934 Arthroderma benhamiae ARB_04934 N 0.000
BDDG_04882 Blastomyces dermatitidis BDDG_04882 N 0.000
ACLA_080560 Aspergillus clavatus CADACLAG00007888 N 0.000
CADAFLAG00005961 Aspergillus flavus CADAFLAG00005961 N 0.000
AFUA_2G08700 Aspergillus fumigatus CADAFUAG00004658 N 0.000
CADANGAG00009847 Aspergillus niger CADANGAG00009847 N 0.000
ANIA_06124 Aspergillus nidulans CADANIAG00006888 N 0.000
ATEG_09704 Aspergillus terreus CADATEAG00004438 N 0.000
NFIA_084300 Neosartorya fischeri CADNFIAG00008100 N 0.000
CIMG_00825 Coccidioides immitis CIMG_00825 N 0.000
EPUS_04289 Endocarpon pusillum EPUS_04289 N 0.000
EURHEDRAFT_464263 Aspergillus ruber EURHEDRAFT_464263 N 0.000
fgenesh1_pg.00772_#_76 Aspergillus carbonarius fgenesh1_pg.00772_#_76 N 0.000
H101_00104 Trichophyton interdigitale H101_00104 N 0.000
H102_05676 Trichophyton rubrum H102_05676 N 0.000
H105_05716 Trichophyton soudanense H105_05716 N 0.000
HCBG_04552 Histoplasma capsulatum HCBG_04552 N 0.000
MCYG_04483 Arthroderma otae MCYG_04483 N 0.000
MCYG_04483 Microsporum canis MCYG_04483 N 0.000
MGYG_02151 Microsporum gypseum MGYG_02151 N 0.000
PAAG_09077 Paracoccidioides sp lutzii PAAG_09077 N 0.000
PABG_04700 Paracoccidioides brasiliensis PABG_04700 N 0.000
Pc13g03900 Penicillium chrysogenum Pc13g03900 N 0.000
PCH_Pc13g03900 Penicillium rubens PCH_Pc13g03900 N 0.000
PDE_04420 Penicillium oxalicum PDE_04420 N 0.000
PDIP_84470 Penicillium digitatum PDIP_84470 N 0.000
PITC_035170 Penicillium italicum PITC_035170 N 0.000
PMAA_071030 Talaromyces marneffei PMAA_071030 N 0.000
PMAA_071030 Penicillium marneffei PMAA_071030 N 0.000
PVAR5_1693 Byssochlamys spectabilis PVAR5_1693 N 0.000
TEQG_01966 Trichophyton equinum TEQG_01966 N 0.000
TESG_01107 Trichophyton tonsurans TESG_01107 N 0.000
TRV_07120 Trichophyton verrucosum TRV_07120 N 0.000
TSTA_091450 Talaromyces stipitatus TSTA_091450 N 0.000
U727_00431070561 Penicillium solitum U727_00431070561 N 0.000
UREG_00787 Uncinocarpus reesii UREG_00787 N 0.000