Carubv10004076m.g (Capsella rubella)
RWP-RK

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF02042 (RWP-RK) IPR003035 Carubv10004076m.g T321089_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
NLP7
M07251_2.00 		Arabidopsis thaliana
WNDTGNCYYTTSRDD
HHYSAARRGNCAHNW		 Dap-seq
OMalley et al.(2016)
NLP7_col_a 		1.000 1.000
NLP4
M07248_2.00 		Arabidopsis thaliana
NNHNNBTGCTGYHNN
NNDRCAGCAVNNDNN		 Dap-seq
OMalley et al.(2016)
AtNLP4_col_b 		0.857 0.857
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Carubv10004076m RWP-RK 592 640

Links

Other RWP-RK family TFs
Other Capsella rubella TFs

416 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ACRE_075020 Acremonium chrysogenum ACRE_075020 N 0.000
CFIO01_13578 Colletotrichum fioriniae CFIO01_13578 N 0.000
CGGC5_547 Colletotrichum gloeosporioides CGGC5_547 N 0.000
Cob_10044 Colletotrichum orbiculare Cob_10044 N 0.000
CPUR_04956 Claviceps purpurea CPUR_04956 N 0.000
CSUB01_05031 Colletotrichum sublineola CSUB01_05031 N 0.000
CTHT_0022700 Chaetomium thermophilum CTHT_0022700 N 0.000
estExt_fgenesh1_pg.C_10747 Cryphonectria parasitica estExt_fgenesh1_pg.C_10747 N 0.000
estExt_Genewise1Plus.C_sca_10_chr8_2_00572 Nectria haematococca estExt_Genewise1Plus.C_sca_10_chr8_2_00572 N 0.000
F503_04396 Ophiostoma piceae uamh F503_04396 N 0.000
FFUJ_08604 Fusarium fujikuroi FFUJ_08604 N 0.000
FGRRES_12742 Fusarium graminearum FGRRES_12742 N 0.000
FOXG_09425 Fusarium oxysporum FOXG_09425 N 0.000
FPSE_03532 Fusarium pseudograminearum FPSE_03532 N 0.000
FVEG_07057 Fusarium verticillioides FVEG_07057 N 0.000
GGTG_09471 Gaeumannomyces graminis GGTG_09471 N 0.000
GLRG_00168 Colletotrichum graminicola GLRG_00168 N 0.000
HMPREF1624_03120 Sporothrix schenckii HMPREF1624_03120 N 0.000
MAJ_03545 Metarhizium majus MAJ_03545 N 0.000
MANI_026245 Metarhizium anisopliae MANI_026245 N 0.000
MBR_07611 Metarhizium brunneum MBR_07611 N 0.000
MGU_03902 Metarhizium guizhouense MGU_03902 N 0.000
NCU16667 Neurospora crassa NCU16667 N 0.000
NechaG71135 Fusarium solani NechaG71135 N 0.000
PODANS_7_2610 Podospora anserina PODANS_7_2610 N 0.000
S40285_00214 Stachybotrys chlorohalonata S40285_00214 N 0.000
S40288_02231 Stachybotrys chartarum S40288_02231 N 0.000
SPBR_01267 Sporothrix brasiliensis SPBR_01267 N 0.000
THITE_2155541 Thielavia terrestris THITE_2155541 N 0.000
TRIATDRAFT_52152 Trichoderma atroviride TRIATDRAFT_52152 N 0.000
UV8b_1336 Ustilaginoidea virens UV8b_1336 N 0.000
VDBG_06797 Verticillium alfalfae VDBG_06797 N 0.000
VDBG_06797 Verticillium albo atrum VDBG_06797 N 0.000
VHEMI09995 Torrubiella hemipterigena VHEMI09995 N 0.000