Carubv10008300m.g (Capsella rubella)
RWP-RK

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF02042 (RWP-RK) IPR003035 Carubv10008300m.g T321092_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
NLP4
M07248_2.00 		Arabidopsis thaliana
NNHNNBTGCTGYHNN
NNDRCAGCAVNNDNN		 Dap-seq
OMalley et al.(2016)
AtNLP4_col_b 		1.000 1.000
NLP7
M07251_2.00 		Arabidopsis thaliana
WNDTGNCYYTTSRDD
HHYSAARRGNCAHNW		 Dap-seq
OMalley et al.(2016)
NLP7_col_a 		0.857 0.857
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Carubv10008300m RWP-RK 558 606

Links

Other RWP-RK family TFs
Other Capsella rubella TFs

398 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Aan_R001830 Calypte anna Aan_R001830 N
Afo_R015384 Aptenodytes forsteri Afo_R015384 N
Alligator_sinensis_CCG000560.1 Alligator sinensis Alligator_sinensis_CCG000560.1 N
MXD4 Anolis carolinensis ENSACAG00000007819 N
ENSAMEG00000014340 Ailuropoda melanoleuca ENSAMEG00000014340 N
ENSAPLG00000004997 Anas platyrhynchos ENSAPLG00000004997 N
MXD4 Bos taurus ENSBTAG00000015209 N
MXD4 Canis familiaris ENSCAFG00000014873 N
MXD4 Callithrix jacchus ENSCJAG00000014432 N
MXD4 Cavia porcellus ENSCPOG00000022492 N
ENSCSAG00000015741 Chlorocebus sabaeus ENSCSAG00000015741 N
mxd4 Danio rerio ENSDARG00000054031 N
MXD4 Equus caballus ENSECAG00000002580 N
MXD4 Echinops telfairi ENSETEG00000005547 N
ENSFALG00000009868 Ficedula albicollis ENSFALG00000009868 N
MXD4 Felis catus ENSFCAG00000012927 N
MXD4 Homo sapiens ENSG00000123933 N
mxd4 Gasterosteus aculeatus ENSGACG00000017587 N
MXD4 Gallus gallus ENSGALG00000015688 N
MXD4 Gorilla gorilla ENSGGOG00000000747 N
ENSLACG00000006663 Latimeria chalumnae ENSLACG00000006663 N
MXD4 Loxodonta africana ENSLAFG00000026709 N
ENSLOCG00000002303 Lepisosteus oculatus ENSLOCG00000002303 N
ENSMEUG00000013427 Macropus eugenii ENSMEUG00000013427 N
MXD4 Meleagris gallopavo ENSMGAG00000013027 N
ENSMMUG00000001160 Macaca mulatta ENSMMUG00000001160 N
MXD4 Monodelphis domestica ENSMODG00000004033 N
ENSMPUG00000010989 Mustela putorius furo ENSMPUG00000010989 N
Mxd4 Mus musculus ENSMUSG00000037235 N
MXD4 Oryctolagus cuniculus ENSOCUG00000005063 N
MXD4 Otolemur garnettii ENSOGAG00000011305 N
ENSONIG00000017548 Oreochromis niloticus ENSONIG00000017548 N
mxd4 Oryzias latipes ENSORLG00000006439 N
ENSP00000337889 Macaca fascicularis ENSP00000337889 N
ENSPANG00000024535 Papio anubis ENSPANG00000024535 N
ENSPFOG00000011915 Poecilia formosa ENSPFOG00000011915 N
ENSPPYG00000014540 Pongo abelii ENSPPYG00000014540 N
ENSPSIG00000016320 Pelodiscus sinensis ENSPSIG00000016320 N
MXD4 Pan troglodytes ENSPTRG00000015844 N
Mxd4 Rattus norvegicus ENSRNOG00000015033 N
ENSSHAG00000011878 Sarcophilus harrisii ENSSHAG00000011878 N
MXD4 Sus scrofa ENSSSCG00000008687 N
ENSSTOG00000028770 Ictidomys tridecemlineatus ENSSTOG00000028770 N
MXD4 Taeniopygia guttata ENSTGUG00000010530 N
mxd4 Tetraodon nigroviridis ENSTNIG00000018042 N
mxd4 Takifugu rubripes ENSTRUG00000003046 N
ENSXMAG00000005473 Xiphophorus maculatus ENSXMAG00000005473 N
Gfo_R003202 Geospiza fortis Gfo_R003202 N
Ogr18275 Ophisaurus gracilis Ogr18275 N
Pvit_14853 Pogona vitticeps Pvit_14853 N
Tal_R007717 Tyto alba Tal_R007717 N
mxd4.L Xenopus laevis XB-GENE-6252709 N
mxd4.S Xenopus laevis XB-GENE-6256011 N
mxd4 Xenopus tropicalis XB-GENE-6257573 N