Carubv10019812m.g (Capsella rubella)
RWP-RK

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF02042 (RWP-RK) IPR003035 Carubv10019812m.g T321097_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
NLP4
M07248_2.00 		Arabidopsis thaliana
NNHNNBTGCTGYHNN
NNDRCAGCAVNNDNN		 Dap-seq
OMalley et al.(2016)
AtNLP4_col_b 		0.939 0.939
NLP7
M07251_2.00 		Arabidopsis thaliana
WNDTGNCYYTTSRDD
HHYSAARRGNCAHNW		 Dap-seq
OMalley et al.(2016)
NLP7_col_a 		0.837 0.837
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Carubv10019812m RWP-RK 549 597

Links

Other RWP-RK family TFs
Other Capsella rubella TFs

415 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
A1O1_03621 Capronia coronata A1O1_03621 N 0.000
A1O7_05540 Cladophialophora yegresii A1O7_05540 N 0.000
A1O9_03728 Exophiala aquamarina A1O9_03728 N 0.000
AOL_s00054g24 Arthrobotrys oligospora AOL_s00054g24 N 0.000
AUEXF2481DRAFT_674882 Aureobasidium subglaciale AUEXF2481DRAFT_674882 N 0.000
BBA_01486 Beauveria bassiana BBA_01486 N 0.000
CADAFLAG00005698 Aspergillus flavus CADAFLAG00005698 N 0.000
CADANGAG00001782 Aspergillus niger CADANGAG00001782 N 0.000
CCM_05346 Cordyceps militaris CCM_05346 N 0.000
CIMG_08698 Coccidioides immitis CIMG_08698 N 0.000
CPC735_062890 Coccidioides posadasii CPC735_062890 N 0.000
EURHEDRAFT_450545 Aspergillus ruber EURHEDRAFT_450545 N 0.000
e_gw1.3.249.1 Cryphonectria parasitica e_gw1.3.249.1 N 0.000
fgenesh1_pg.00866_#_308 Aspergillus carbonarius fgenesh1_pg.00866_#_308 N 0.000
H101_00180 Trichophyton interdigitale H101_00180 N 0.000
HCBG_07158 Histoplasma capsulatum HCBG_07158 N 0.000
HMPREF1120_01168 Exophiala dermatitidis HMPREF1120_01168 N 0.000
PABG_07685 Paracoccidioides brasiliensis PABG_07685 N 0.000
PV04_05906 Capronia semiimmersa PV04_05906 N 0.000
PV05_04590 Exophiala xenobiotica PV05_04590 N 0.000
PV06_01163 Exophiala oligosperma PV06_01163 N 0.000
PV10_06983 Exophiala mesophila PV10_06983 N 0.000
SAKL0F11198g Lachancea kluyveri SAKL0F11198g N 0.000
TEQG_05658 Trichophyton equinum TEQG_05658 N 0.000
TESG_01616 Trichophyton tonsurans TESG_01616 N 0.000
UREG_02683 Uncinocarpus reesii UREG_02683 N 0.000
VHEMI03538 Torrubiella hemipterigena VHEMI03538 N 0.000
Z518_08281 Rhinocladiella mackenziei Z518_08281 N 0.000