MDP0000266172 (Malus domestica)
RWP-RK

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF02042 (RWP-RK) IPR003035 MDP0000266172 T321197_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
RKD2
M07249_2.00 		Arabidopsis thaliana
NHGWCBNTTCRDCTTCYHN
NDRGAAGHYGAANVGWCDN		 Dap-seq
OMalley et al.(2016)
RKD2_col_a 		0.857 0.857
RKD2
M07250_2.00 		Arabidopsis thaliana
GWCBBTTCRDMTTCC
GGAAKHYGAAVVGWC		 Dap-seq
OMalley et al.(2016)
RKD2_colamp_a 		0.857 0.857
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
MDP0000266172 RWP-RK 177 225

Links

Other RWP-RK family TFs
Other Malus domestica TFs

100 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ENSAMEG00000008443 Ailuropoda melanoleuca ENSAMEG00000008443 N 0.000
ENSAMXG00000015160 Astyanax mexicanus ENSAMXG00000015160 N 0.000
ENSAPLG00000013653 Anas platyrhynchos ENSAPLG00000013653 N 0.000
AHRR Bos taurus ENSBTAG00000026527 N 0.000
ENSBTAP00000011351-D1 Bos grunniens ENSBTAP00000011351-D1 N 0.000
ENSCSAG00000017432 Chlorocebus sabaeus ENSCSAG00000017432 N 0.000
AHRR Equus caballus ENSECAG00000017812 N 0.000
AHRR Felis catus ENSFCAG00000015430 N 0.000
AHRR Homo sapiens ENSG00000063438 N 0.000
ahrrb Gasterosteus aculeatus ENSGACG00000001925 N 0.000
AHRR Gallus gallus ENSGALG00000013402 N 0.000
AHRR Gorilla gorilla ENSGGOG00000013694 N 0.000
ENSGMOG00000009114 Gadus morhua ENSGMOG00000009114 N 0.000
AHRR Meleagris gallopavo ENSMGAG00000007591 N 0.000
PDCD6 Macaca mulatta ENSMMUG00000000752 N 0.000
ENSMMUP00000001012 Macaca fascicularis ENSMMUP00000001012 N 0.000
ENSMPUG00000010246 Mustela putorius furo ENSMPUG00000010246 N 0.000
Ahrr Mus musculus ENSMUSG00000021575 N 0.000
ENSNLEG00000010815 Nomascus leucogenys ENSNLEG00000010815 N 0.000
ENSOARG00000015756 Ovis aries ENSOARG00000015756 N 0.000
ENSOCUG00000021638 Oryctolagus cuniculus ENSOCUG00000021638 N 0.000
AHRR Otolemur garnettii ENSOGAG00000010416 N 0.000
ENSONIG00000017966 Oreochromis niloticus ENSONIG00000017966 N 0.000
ahrrb Oryzias latipes ENSORLG00000005309 N 0.000
ENSPANG00000023865 Papio anubis ENSPANG00000023865 N 0.000
ENSPFOG00000012230 Poecilia formosa ENSPFOG00000012230 N 0.000
ENSPSIG00000007107 Pelodiscus sinensis ENSPSIG00000007107 N 0.000
Ahrr Rattus norvegicus ENSRNOG00000014721 N 0.000
ENSTGUG00000008731 Taeniopygia guttata ENSTGUG00000008731 N 0.000
ahrrb Tetraodon nigroviridis ENSTNIG00000008751 N 0.000
ahrr Takifugu rubripes ENSTRUG00000003745 N 0.000