Pavir.Ca00444 (Panicum virgatum)
RWP-RK

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF02042 (RWP-RK) IPR003035 Pavir.Ca00444 T321218_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
NLP7
M07251_2.00 		Arabidopsis thaliana
WNDTGNCYYTTSRDD
HHYSAARRGNCAHNW		 Dap-seq
OMalley et al.(2016)
NLP7_col_a 		0.857 0.857
NLP4
M07248_2.00 		Arabidopsis thaliana
NNHNNBTGCTGYHNN
NNDRCAGCAVNNDNN		 Dap-seq
OMalley et al.(2016)
AtNLP4_col_b 		0.714 0.714
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Pavir.Ca00444.1.p RWP-RK 564 612
Pavir.Ca00444.2.p RWP-RK 433 481
Pavir.Ca00444.3.p RWP-RK 433 481
Pavir.Ca00444.4.p RWP-RK 433 481
Pavir.Ca00444.5.p RWP-RK 433 481

Links

Other RWP-RK family TFs
Other Panicum virgatum TFs

376 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ACAC_0000009901 Angiostrongylus cantonensis ACAC_0000009901 N 0.000
ANCCAN_06777 Ancylostoma caninum ANCCAN_06777 N 0.000
ANCCAN_24534 Ancylostoma caninum ANCCAN_24534 N 0.000
ANCCEY_09857 Ancylostoma ceylanicum ANCCEY_09857 N 0.000
ANCDUO_18397 Ancylostoma duodenale ANCDUO_18397 N 0.000
DICVIV_09393 Dictyocaulus viviparus DICVIV_09393 N 0.000
HCOI01994100 Haemonchus contortus HCOI01994100 N 0.000
NECAME_19305 Necator americanus NECAME_19305 N 0.000
TELCIR_12260 Teladorsagia circumcincta TELCIR_12260 N 0.000
TELCIR_19595 Teladorsagia circumcincta TELCIR_19595 N 0.000