CIS-BP Database: Catalog of Inferred Sequence Binding Preferences

TF Information

OBART03G39900 *(Oryza barthii)* SBP
Pfam ID	Interpro ID	Gene ID	CIS-BP ID	Sequence source	Animal TF db
PF03110 (SBP)	IPR004333	OBART03G39900	T322774_2.00	Ensembl (2018-Dec-8)	Link out
Directly determined binding motifs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
No direct experiments
Motifs from related TFs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
PK06791.1 M02482_2.00	Cannabis sativa	NNGTACGRN	NYCGTACNN	PBM Weirauch et al.(2014) pTH9583	0.975	0.827
SPL1 M00887_2.00	Arabidopsis thaliana	NGTACGGHN	NDCCGTACN	PBM Franco-Zorrilla et al.(2014) SPL1	0.975	0.827
SPL1 M07259_2.00	Arabidopsis thaliana	NNNBGTACGGW	WCCGTACVNNN	Dap-seq OMalley et al.(2016) SPL1_col_a	0.975	0.827
SPL1 M07260_2.00	Arabidopsis thaliana	NNGTACGKWH	DWMCGTACNN	Dap-seq OMalley et al.(2016) SPL1_colamp_a	0.975	0.827
estExt_fgenesh1_pg.C_1940033 M02479_2.00	Physcomitrella patens	NNGTACGDH	DHCGTACNN	PBM Weirauch et al.(2014) pTH8664	0.968	0.747
SPL14 M02470_2.00	Arabidopsis thaliana	NNNRTACNN	NNGTAYNNN	PBM Weirauch et al.(2014) pTH8191	0.965	0.787
SPL14 M07253_2.00	Arabidopsis thaliana	NNNBGTACGGW	WCCGTACVNNN	Dap-seq OMalley et al.(2016) SPL14_col_a	0.965	0.787
SPL14 M11270_2.00	Arabidopsis thaliana	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$SPL14_01	0.965	0.787
SPL12 M02475_2.00	Arabidopsis thaliana	NGTACGDN	NHCGTACN	PBM Weirauch et al.(2014) pTH7500	0.963	0.787
POPTR_0002s00440 M02477_2.00	Populus trichocarpa	NGTACGG	CCGTACN	PBM Weirauch et al.(2014) pTH9280	0.960	0.773
AT1G76580 M02473_2.00	Arabidopsis thaliana	NNNRTAYNNN	NNNRTAYNNN	PBM Weirauch et al.(2014) pTH8668	0.956	0.760
PRUPE_ppa000682mg M02478_2.00	Prunus persica	NNNNGTACGD	HCGTACNNNN	PBM Weirauch et al.(2014) pTH9281	0.956	0.773
SPL4 M02472_2.00	Arabidopsis thaliana	NRTACDDNN	NNHHGTAYN	PBM Weirauch et al.(2014) pTH7408	0.949	0.707
SPL5 M02474_2.00	Arabidopsis thaliana	NNGTACGDN	NHCGTACNN	PBM Weirauch et al.(2014) pTH7385	0.942	0.693
SPL5 M07261_2.00	Arabidopsis thaliana	NDNYGTACGGAH	DTCCGTACRNHN	Dap-seq OMalley et al.(2016) SPL5_col_a	0.942	0.693
SPL5 M07262_2.00	Arabidopsis thaliana	NBGTACGGWH	DWCCGTACVN	Dap-seq OMalley et al.(2016) SPL5_colamp_a	0.942	0.693
PK22320.1 M02483_2.00	Cannabis sativa	NNGTACGGNN	NNCCGTACNN	PBM Weirauch et al.(2014) pTH9723	0.939	0.693
SPL3 M07255_2.00	Arabidopsis thaliana	NGTACGGA	TCCGTACN	Dap-seq OMalley et al.(2016) SPL3_col_a	0.937	0.680
SPL3 M07256_2.00	Arabidopsis thaliana	NDNTGTACGGAHN	NDTCCGTACANHN	Dap-seq OMalley et al.(2016) SPL3_colamp_a	0.937	0.680
SPL3 M02715_2.00	Arabidopsis thaliana	DDDDDNGTACGKHHHH	DDDDMCGTACNHHHHH	SELEX Mathelier et al.(2014) MA0577.1	0.937	0.680
For this family, TFs with SR scores > 0.885* will likely have a similar motif*

DNA Binding Domains

Protein ID	Domain	From	To	Sequence
OBART03G39900.1	SBP	152	226	CQVEGCTADLTGVRDYHRRHKVCEMHAKATTAVVGNTVQRFCQQCSRFHPLQEFDEGKRSCRRRLAGHNRRRRKT

Links
Other SBP family TFs
Other *Oryza barthii* TFs

491 Related TFs

Name	Species	Gene ID	Motif Evidence	SR Score	Action
A1O9_04228	Exophiala aquamarina	A1O9_04228	N
Z518_09549	Rhinocladiella mackenziei	Z518_09549	N

OBART03G39900 (Oryza barthii) SBP

TF Information

Directly determined binding motifs

Motifs from related TFs

DNA Binding Domains

Links

491 Related TFs

OBART03G39900 **(Oryza barthii)
SBP**