Pm008474 (Prunus mume)
SBP

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF03110 (SBP) IPR004333 Pm008474 T323203_2.00 GigaDB (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
SPL1
M00887_2.00 		Arabidopsis thaliana
NGTACGGHN
NDCCGTACN		 PBM
Franco-Zorrilla et al.(2014)
SPL1 		0.976 0.853
SPL1
M07259_2.00 		Arabidopsis thaliana
NNNBGTACGGW
WCCGTACVNNN		 Dap-seq
OMalley et al.(2016)
SPL1_col_a 		0.976 0.853
SPL1
M07260_2.00 		Arabidopsis thaliana
NNGTACGKWH
DWMCGTACNN		 Dap-seq
OMalley et al.(2016)
SPL1_colamp_a 		0.976 0.853
PK06791.1
M02482_2.00 		Cannabis sativa
NNGTACGRN
NYCGTACNN		 PBM
Weirauch et al.(2014)
pTH9583 		0.973 0.880
PRUPE_ppa000682mg
M02478_2.00 		Prunus persica
NNNNGTACGD
HCGTACNNNN		 PBM
Weirauch et al.(2014)
pTH9281 		0.961 0.827
estExt_fgenesh1_pg.C_1940033
M02479_2.00 		Physcomitrella patens
NNGTACGDH
DHCGTACNN		 PBM
Weirauch et al.(2014)
pTH8664 		0.961 0.787
POPTR_0002s00440
M02477_2.00 		Populus trichocarpa
NGTACGG
CCGTACN		 PBM
Weirauch et al.(2014)
pTH9280 		0.960 0.840
SPL12
M02475_2.00 		Arabidopsis thaliana
NGTACGDN
NHCGTACN		 PBM
Weirauch et al.(2014)
pTH7500 		0.958 0.800
SPL14
M02470_2.00 		Arabidopsis thaliana
NNNRTACNN
NNGTAYNNN		 PBM
Weirauch et al.(2014)
pTH8191 		0.957 0.840
SPL14
M07253_2.00 		Arabidopsis thaliana
NNNBGTACGGW
WCCGTACVNNN		 Dap-seq
OMalley et al.(2016)
SPL14_col_a 		0.957 0.840
SPL14
M11270_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$SPL14_01 		0.957 0.840
AT1G76580
M02473_2.00 		Arabidopsis thaliana
NNNRTAYNNN
NNNRTAYNNN		 PBM
Weirauch et al.(2014)
pTH8668 		0.956 0.827
SPL3
M07255_2.00 		Arabidopsis thaliana
NGTACGGA
TCCGTACN		 Dap-seq
OMalley et al.(2016)
SPL3_col_a 		0.950 0.707
SPL3
M07256_2.00 		Arabidopsis thaliana
NDNTGTACGGAHN
NDTCCGTACANHN		 Dap-seq
OMalley et al.(2016)
SPL3_colamp_a 		0.950 0.707
SPL3
M02715_2.00 		Arabidopsis thaliana
DDDDDNGTACGKHHHH
DDDDMCGTACNHHHHH		 SELEX
Mathelier et al.(2014)
MA0577.1 		0.950 0.707
SPL4
M02472_2.00 		Arabidopsis thaliana
NRTACDDNN
NNHHGTAYN		 PBM
Weirauch et al.(2014)
pTH7408 		0.939 0.693
SPL5
M02474_2.00 		Arabidopsis thaliana
NNGTACGDN
NHCGTACNN		 PBM
Weirauch et al.(2014)
pTH7385 		0.935 0.680
SPL5
M07261_2.00 		Arabidopsis thaliana
NDNYGTACGGAH
DTCCGTACRNHN		 Dap-seq
OMalley et al.(2016)
SPL5_col_a 		0.935 0.680
SPL5
M07262_2.00 		Arabidopsis thaliana
NBGTACGGWH
DWCCGTACVN		 Dap-seq
OMalley et al.(2016)
SPL5_colamp_a 		0.935 0.680
PK22320.1
M02483_2.00 		Cannabis sativa
NNGTACGGNN
NNCCGTACNN		 PBM
Weirauch et al.(2014)
pTH9723 		0.934 0.707
For this family, TFs with SR scores > 0.885 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Pm008474 SBP 148 222

Links

Other SBP family TFs
Other Prunus mume TFs

435 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
AALB009393 Anopheles albimanus AALB009393 I
AARA001656 Anopheles arabiensis AARA001656 I
AATE021108 Anopheles atroparvus AATE021108 I
ACHR007539 Anopheles christyi ACHR007539 I
ACOM033756 Anopheles coluzzii ACOM033756 I
ACUA025676 Anopheles culicifacies ACUA025676 I
ADIR010044 Anopheles dirus ADIR010044 I
AEPI006953 Anopheles epiroticus AEPI006953 I
AFAF007581 Anopheles farauti AFAF007581 I
AFUN009221 Anopheles funestus AFUN009221 I
AMAM006284 Anopheles maculatus AMAM006284 I
AMEC003386 Anopheles melas AMEC003386 I
AMEC015151 Anopheles melas AMEC015151 I
AMEM001654 Anopheles merus AMEM001654 I
AMIN002289 Anopheles minimus AMIN002289 I
AQUA006380 Anopheles quadriannulatus AQUA006380 I
ASIS019148 Anopheles sinensis ASIS019148 I
ASTEI08021 Anopheles stephensi ASTEI08021 I
BGIBMGA013198 Bombyx mori BGIBMGA013198 D
DAPPUDRAFT_43067 Daphnia pulex DAPPUDRAFT_43067 I
HMEL014166 Heliconius melpomene HMEL014166 I
KGM_08612 Danaus plexippus KGM_08612 I
LCUP013174 Lucilia cuprina LCUP013174 I
PHUM322020 Pediculus humanus PHUM322020 I
PPAI008545 Phlebotomus papatasi PPAI008545 I
SINV23626 Solenopsis invicta SINV23626 I