orange1.1g008352m.g (Citrus sinensis)
Sigma 70

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF04542 (Sigma70_r2) IPR007627 orange1.1g008352m.g T324222_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
orange1.1g008352m Sigma 70 333 403
orange1.1g008556m Sigma 70 325 395
orange1.1g008652m Sigma 70 322 392
orange1.1g009567m Sigma 70 296 366
orange1.1g011324m Sigma 70 333 403
orange1.1g011577m Sigma 70 333 403
orange1.1g011992m Sigma 70 333 383
orange1.1g014193m Sigma 70 333 403
orange1.1g014241m Sigma 70 333 402
orange1.1g017044m Sigma 70 333 362
orange1.1g018065m Sigma 70 333 361

Links

Other Sigma 70 family TFs
Other Citrus sinensis TFs

44 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
BGIOSGA006275 Oryza indica BGIOSGA006275 N
OB02G27720 Oryza brachyantha OB02G27720 N
OBART02G20160 Oryza barthii OBART02G20160 N
OGLUM02G20470 Oryza glumaepatula OGLUM02G20470 N
OLONG_002407 Oryza longistaminata OLONG_002407 N
OMERI02G19950 Oryza meridionalis OMERI02G19950 N
ONIVA02G22270 Oryza nivara ONIVA02G22270 N
OPUNC02G18090 Oryza punctata OPUNC02G18090 N
ORGLA02G0172900 Oryza glaberrima ORGLA02G0172900 N
ORUFI02G21290 Oryza rufipogon ORUFI02G21290 N
OS02G0551400 Oryza sativa OS02G0551400 N