Bo6g073320 (Brassica oleracea)
Sox

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00505 (HMG_box) IPR000910 Bo6g073320 T326660_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
YAB1
M00890_2.00 		Arabidopsis thaliana
AATAATWA
TWATTATT		 PBM
Franco-Zorrilla et al.(2014)
YAB1 		0.741 1.000
YAB5
M02486_2.00 		Arabidopsis thaliana
NNNNHRN
NYDNNNN		 PBM
Weirauch et al.(2014)
pTH7575 		0.707 0.932
YAB5
M00889_2.00 		Arabidopsis thaliana
NATRATTADNNN
NNNHTAATYATN		 PBM
Franco-Zorrilla et al.(2014)
YAB5 		0.707 0.932
CRC
M07266_2.00 		Arabidopsis thaliana
TWATCATW
WATGATWA		 Dap-seq
OMalley et al.(2016)
CRC_col_a 		0.660 0.705
CRC
M07267_2.00 		Arabidopsis thaliana
GGTTAGTGTTTTGGAGTCGAATATGACTTG
CAAGTCATATTCGACTCCAAAACACTAACC		 Dap-seq
OMalley et al.(2016)
CRC_colamp_a 		0.660 0.705
INO
M02485_2.00 		Arabidopsis thaliana
NHNNNYRNNN
NNNYRNNNDN		 PBM
Weirauch et al.(2014)
pTH7516 		0.596 0.750
For this family, TFs with SR scores > 0.415 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Bo6g073320.1 Sox 141 184

Links

Other Sox family TFs
Other Brassica oleracea TFs

531 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Al_scaffold_0004_2305 Arabidopsis lyrata Al_scaffold_0004_2305 I
BGIOSGA000583 Oryza indica BGIOSGA000583 N
BGIOSGA004703 Oryza indica BGIOSGA004703 I
BGIOSGA012523 Oryza indica BGIOSGA012523 N
BGIOSGA012525 Oryza indica BGIOSGA012525 N
BGIOSGA017861 Oryza indica BGIOSGA017861 N
BGIOSGA032700 Oryza indica BGIOSGA032700 N
BGIOSGA034615 Oryza indica BGIOSGA034615 N
BGIOSGA034616 Oryza indica BGIOSGA034616 N
BGIOSGA036759 Oryza indica BGIOSGA036759 N
BGIOSGA036760 Oryza indica BGIOSGA036760 N
Bo4g012750 Brassica oleracea Bo4g012750 I
Bra004586 Brassica rapa Bra004586 I
BRADI1G63910 Brachypodium distachyon BRADI1G63910 N
BRADI2G22230 Brachypodium distachyon BRADI2G22230 I
BRADI2G53495 Brachypodium distachyon BRADI2G53495 I
BRADI4G25717 Brachypodium distachyon BRADI4G25717 N
Cucsa.259110 Cucumis sativus Cucsa.259110 I
F775_02926 Aegilops tauschii F775_02926 N
F775_03972 Aegilops tauschii F775_03972 N
F775_22564 Aegilops tauschii F775_22564 I
F775_23182 Aegilops tauschii F775_23182 I
F775_28648 Aegilops tauschii F775_28648 N
F775_31089 Aegilops tauschii F775_31089 N
F775_31341 Aegilops tauschii F775_31341 I
fgenesh1_pm.C_scaffold_4001818 Arabidopsis lyrata fgenesh1_pm.C_scaffold_4001818 I
GRMZM2G030272 Zea mays GRMZM2G030272 N
GRMZM2G060918 Zea mays GRMZM2G060918 N
GRMZM2G063216 Zea mays GRMZM2G063216 N
GRMZM2G065290 Zea mays GRMZM2G065290 I
GRMZM2G099593 Zea mays GRMZM2G099593 N
GRMZM2G400559 Zea mays GRMZM2G400559 N
GRMZM2G461648 Zea mays GRMZM2G461648 N
GSMUA_Achr7G22020_001 Musa acuminata GSMUA_Achr7G22020_001 I
GSMUA_Achr8G25110_001 Musa acuminata GSMUA_Achr8G25110_001 I
LPERR03G13630 Leersia perrieri LPERR03G13630 N
LPERR05G16150 Leersia perrieri LPERR05G16150 I
LPERR05G16160 Leersia perrieri LPERR05G16160 N
LPERR10G04210 Leersia perrieri LPERR10G04210 I
LPERR11G00940 Leersia perrieri LPERR11G00940 N
LPERR11G00950 Leersia perrieri LPERR11G00950 N
LPERR12G01060 Leersia perrieri LPERR12G01060 N
MLOC_11088 Hordeum vulgare MLOC_11088 N
MLOC_34522 Hordeum vulgare MLOC_34522 N
MLOC_57051 Hordeum vulgare MLOC_57051 I
MLOC_57764 Hordeum vulgare MLOC_57764 N
MLOC_6114 Hordeum vulgare MLOC_6114 I
MTR_5g067700 Medicago truncatula MTR_5g067700 I
MTR_7g073430 Medicago truncatula MTR_7g073430 I
OB01G44140 Oryza brachyantha OB01G44140 I
OB03G25300 Oryza brachyantha OB03G25300 N
OB05G27840 Oryza brachyantha OB05G27840 N
OB11G10730 Oryza brachyantha OB11G10730 N
OB11G10740 Oryza brachyantha OB11G10740 N
OB12G10990 Oryza brachyantha OB12G10990 N
OB12G11010 Oryza brachyantha OB12G11010 N
OBART01G35310 Oryza barthii OBART01G35310 I
OBART03G15470 Oryza barthii OBART03G15470 N
OBART05G20320 Oryza barthii OBART05G20320 N
OBART10G05920 Oryza barthii OBART10G05920 N
OBART11G01070 Oryza barthii OBART11G01070 N
OBART11G01090 Oryza barthii OBART11G01090 N
OBART12G00800 Oryza barthii OBART12G00800 N
OBART12G00820 Oryza barthii OBART12G00820 N
OGLUM01G39380 Oryza glumaepatula OGLUM01G39380 N
OGLUM03G15660 Oryza glumaepatula OGLUM03G15660 N
OGLUM05G21430 Oryza glumaepatula OGLUM05G21430 N
OGLUM12G01250 Oryza glumaepatula OGLUM12G01250 N
OGLUM12G01270 Oryza glumaepatula OGLUM12G01270 N
OGLUM12G01320 Oryza glumaepatula OGLUM12G01320 N
OLONG_001744 Oryza longistaminata OLONG_001744 N
OLONG_007113 Oryza longistaminata OLONG_007113 N
OLONG_022888 Oryza longistaminata OLONG_022888 N
OLONG_028722 Oryza longistaminata OLONG_028722 N
OMERI05G18240 Oryza meridionalis OMERI05G18240 N
OMERI10G04260 Oryza meridionalis OMERI10G04260 N
OMERI11G01480 Oryza meridionalis OMERI11G01480 N
OMERI12G00120 Oryza meridionalis OMERI12G00120 N
ONIVA01G40340 Oryza nivara ONIVA01G40340 I
ONIVA01G40380 Oryza nivara ONIVA01G40380 N
ONIVA03G16490 Oryza nivara ONIVA03G16490 N
ONIVA05G21450 Oryza nivara ONIVA05G21450 N
ONIVA10G05410 Oryza nivara ONIVA10G05410 N
ONIVA11G01010 Oryza nivara ONIVA11G01010 N
ONIVA11G01030 Oryza nivara ONIVA11G01030 N
ONIVA12G00800 Oryza nivara ONIVA12G00800 N
OPUNC01G34290 Oryza punctata OPUNC01G34290 N
OPUNC03G15030 Oryza punctata OPUNC03G15030 N
OPUNC05G17990 Oryza punctata OPUNC05G17990 N
OPUNC10G05310 Oryza punctata OPUNC10G05310 N
OPUNC11G00940 Oryza punctata OPUNC11G00940 N
OPUNC12G00950 Oryza punctata OPUNC12G00950 N
OPUNC12G00960 Oryza punctata OPUNC12G00960 N
ORGLA01G0291800 Oryza glaberrima ORGLA01G0291800 I
ORGLA01G0292000 Oryza glaberrima ORGLA01G0292000 N
ORGLA03G0148400 Oryza glaberrima ORGLA03G0148400 N
ORGLA05G0177300 Oryza glaberrima ORGLA05G0177300 N
ORGLA10G0049300 Oryza glaberrima ORGLA10G0049300 N
ORGLA11G0201600 Oryza glaberrima ORGLA11G0201600 N
ORGLA11G0201700 Oryza glaberrima ORGLA11G0201700 N
ORGLA12G0007100 Oryza glaberrima ORGLA12G0007100 N
ORGLA12G0007300 Oryza glaberrima ORGLA12G0007300 N
ORUFI01G38660 Oryza rufipogon ORUFI01G38660 I
ORUFI01G38680 Oryza rufipogon ORUFI01G38680 N
ORUFI03G16080 Oryza rufipogon ORUFI03G16080 N
ORUFI05G21590 Oryza rufipogon ORUFI05G21590 N
ORUFI10G06270 Oryza rufipogon ORUFI10G06270 N
ORUFI11G01010 Oryza rufipogon ORUFI11G01010 N
ORUFI11G01040 Oryza rufipogon ORUFI11G01040 N
ORUFI12G01140 Oryza rufipogon ORUFI12G01140 N
ORUFI12G01160 Oryza rufipogon ORUFI12G01160 N
OS01G0820700 Oryza sativa OS01G0820700 I
OS03G0321700 Oryza sativa OS03G0321700 N
OS05G0478700 Oryza sativa OS05G0478700 N
OS11G0116900 Oryza sativa OS11G0116900 N
OS12G0116400 Oryza sativa OS12G0116400 N
Pavir.Ca00178 Panicum virgatum Pavir.Ca00178 N
Pavir.Ga02545 Panicum virgatum Pavir.Ga02545 N
Pavir.Hb02025 Panicum virgatum Pavir.Hb02025 N
Pavir.Ia03459 Panicum virgatum Pavir.Ia03459 N
Pavir.Ib01500 Panicum virgatum Pavir.Ib01500 N
Pavir.J07662 Panicum virgatum Pavir.J07662 I
Pavir.J16737 Panicum virgatum Pavir.J16737 N
Pavir.J18239 Panicum virgatum Pavir.J18239 I
Pavir.J31578 Panicum virgatum Pavir.J31578 N
Pavir.J35902 Panicum virgatum Pavir.J35902 I
Pavir.J37617 Panicum virgatum Pavir.J37617 N
Pavir.J38024 Panicum virgatum Pavir.J38024 N
Pavir.J41073 Panicum virgatum Pavir.J41073 I
PDK_20s1519811g001 Phoenix dactylifera PDK_20s1519811g001 I
PDK_20s1519811g002 Phoenix dactylifera PDK_20s1519811g002 I
Sb01g036870 Sorghum bicolor Sb01g036870 N
Sb03g038180 Sorghum bicolor Sb03g038180 I
Sb05g001170 Sorghum bicolor Sb05g001170 N
Sb08g002590 Sorghum bicolor Sb08g002590 N
Si002121m.g Setaria italica Si002121m.g I
Si005138m.g Setaria italica Si005138m.g N
Si010706m.g Setaria italica Si010706m.g N
Si011007m.g Setaria italica Si011007m.g N
Si024816m.g Setaria italica Si024816m.g I
Si026670m.g Setaria italica Si026670m.g N
Si026831m.g Setaria italica Si026831m.g N
Si027328m.g Setaria italica Si027328m.g N
Si027574m.g Setaria italica Si027574m.g I
Si027769m.g Setaria italica Si027769m.g N
Si027946m.g Setaria italica Si027946m.g N
Si027998m.g Setaria italica Si027998m.g N
Si028270m.g Setaria italica Si028270m.g N
Si039519m.g Setaria italica Si039519m.g N
Traes_1AL_309623B48 Triticum aestivum Traes_1AL_309623B48 N
Traes_1AL_B24F28600 Triticum aestivum Traes_1AL_B24F28600 I
Traes_1BL_46340D685 Triticum aestivum Traes_1BL_46340D685 N
Traes_1BL_B4AFDB663 Triticum aestivum Traes_1BL_B4AFDB663 I
Traes_1DL_DFE1721E0 Triticum aestivum Traes_1DL_DFE1721E0 N
Traes_3AL_2297D6E18 Triticum aestivum Traes_3AL_2297D6E18 I
Traes_3B_8B0D448D8 Triticum aestivum Traes_3B_8B0D448D8 I
Traes_3DL_48F7A19D2 Triticum aestivum Traes_3DL_48F7A19D2 I
Traes_4AL_9E0D1CFA6 Triticum aestivum Traes_4AL_9E0D1CFA6 N
Traes_4AS_70DF607CC Triticum aestivum Traes_4AS_70DF607CC N
Traes_4BL_A8C6FBEB6 Triticum aestivum Traes_4BL_A8C6FBEB6 N
Traes_4BS_A6D9EB0E5 Triticum aestivum Traes_4BS_A6D9EB0E5 N
Traes_4DL_3140A8240 Triticum aestivum Traes_4DL_3140A8240 N
Traes_4DS_FE38A59D0 Triticum aestivum Traes_4DS_FE38A59D0 N
TRIUR3_06231 Triticum urartu TRIUR3_06231 N
TRIUR3_14306 Triticum urartu TRIUR3_14306 I
TRIUR3_22129 Triticum urartu TRIUR3_22129 N
TRIUR3_27575 Triticum urartu TRIUR3_27575 I
TRIUR3_34396 Triticum urartu TRIUR3_34396 I