CBG16279 (Caenorhabditis briggsae)
Sox

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00505 (HMG_box) IPR000910 CBG16279 T326867_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ROX1
M00070_2.00 		Saccharomyces cerevisiae
NRAACAATWNN
NNWATTGTTYN		 PBM
Badis et al.(2008)
ROX1_2099 		0.435 0.377
ROX1
M07498_2.00 		Saccharomyces cerevisiae
YYHATTGTTYTS
SARAACAATDRR		 PBM, CSA and or DIP-chip
Mathelier et al.(2014)
MA0371.1 		0.435 0.377
ROX1
M08607_2.00 		Saccharomyces cerevisiae
BYATTGTN
NACAATRV		 Misc
DeBoer et al.(2011)
YPR065W_1396 		0.435 0.377
ROX1
M11346_2.00 		Saccharomyces cerevisiae Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
F$ROX1_Q6_01 		0.435 0.377
ROX1
M11347_2.00 		Saccharomyces cerevisiae Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
F$ROX1_Q6 		0.435 0.377
For this family, TFs with SR scores > 0.415 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
CBG16279 Sox 64 132

Links

Other Sox family TFs
Other Caenorhabditis briggsae TFs

80 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
22516_YPR065W Saccharomyces mikatae 22516_YPR065W I 0.435
23192_YPR065W Saccharomyces paradoxus 23192_YPR065W I 0.435
AACERI_AaceriAAR026W Saccharomycetaceae sp ashbya aceri AACERI_AaceriAAR026W I 0.419
AACERI_AaceriADL331C Saccharomycetaceae sp ashbya aceri AACERI_AaceriADL331C I 0.415
AGOS_ADL331C Ashbya gossypii AGOS_ADL331C I 0.415
CBG07189 Caenorhabditis briggsae CBG07189 I 0.488
CBG12840 Caenorhabditis briggsae CBG12840 I 0.436
CC1G_13679 Coprinopsis cinerea CC1G_13679 I 0.416
CERSUDRAFT_118854 Ceriporiopsis subvermispora CERSUDRAFT_118854 I 0.416
CERSUDRAFT_97591 Ceriporiopsis subvermispora CERSUDRAFT_97591 N 0.426
CORT_0A01160 Candida orthopsilosis CORT_0A01160 I 0.422
CPAG_04451 Candida parapsilosis CPAG_04451 I 0.422
DEHA2E09460g Debaryomyces hansenii DEHA2E09460g I 0.430
ECANG7_10853 Echinococcus canadensis ECANG7_10853 I 0.416
Ecym_1257 Eremothecium cymbalariae Ecym_1257 I 0.419
Ecym_3473 Eremothecium cymbalariae Ecym_3473 I 0.415
GALMADRAFT_213842 Galerina marginata GALMADRAFT_213842 I 0.418
GALMADRAFT_33159 Galerina marginata GALMADRAFT_33159 I 0.422
GLOINDRAFT_46580 Rhizophagus irregularis GLOINDRAFT_46580 I 0.419
GLOINDRAFT_52776 Rhizophagus irregularis GLOINDRAFT_52776 I 0.433
GNLVRS01_PISO0K11912g Millerozyma farinosa GNLVRS01_PISO0K11912g I 0.430
GNLVRS01_PISO0L11913g Millerozyma farinosa GNLVRS01_PISO0L11913g I 0.430
GSTUM_00001090001 Tuber melanosporum GSTUM_00001090001 I 0.430
GYMLUDRAFT_162520 Gymnopus luxurians GYMLUDRAFT_162520 I 0.418
HDID_0000236901 Hymenolepis diminuta HDID_0000236901 I 0.416
HmN_000874900 Hymenolepis microstoma HmN_000874900 I 0.416
HMPREF1120_08862 Exophiala dermatitidis HMPREF1120_08862 I 0.424
HNAJ_0001105001 Hymenolepis nana HNAJ_0001105001 I 0.416
HPODL_00225 Ogataea parapolymorpha HPODL_00225 I 0.433
JL09_g4172 Pichia kudriavzevii JL09_g4172 I 0.467
K443DRAFT_126060 Laccaria amethystina K443DRAFT_126060 I 0.425
KAFR_0G02830 Kazachstania africana KAFR_0G02830 I 0.422
KAFR_0H00950 Kazachstania africana KAFR_0H00950 I 0.461
KNAG_0H00720 Kazachstania naganishii KNAG_0H00720 I 0.425
KUCA_T00002521001 Kuraishia capsulata KUCA_T00002521001 I 0.467
LACBIDRAFT_327972 Laccaria bicolor LACBIDRAFT_327972 I 0.425
LELG_00108 Lodderomyces elongisporus LELG_00108 I 0.430
M407DRAFT_49125 Tulasnella calospora M407DRAFT_49125 I 0.453
MELLADRAFT_111305 Melampsora laricipopulina MELLADRAFT_111305 I 0.416
MELLADRAFT_114973 Melampsora laricipopulina MELLADRAFT_114973 N 0.416
Moror_2098 Moniliophthora roreri Moror_2098 I 0.441
Moror_2734 Moniliophthora roreri Moror_2734 I 0.420
Moror_8177 Moniliophthora roreri Moror_8177 I 0.416
NCAS_0A11120 Naumovozyma castellii NCAS_0A11120 I 0.443
NCAS_0E02010 Naumovozyma castellii NCAS_0E02010 I 0.422
NDAI_0E03570 Naumovozyma dairenensis NDAI_0E03570 I 0.429
Ocbimv22001036m.g Octopus bimaculoides Ocbimv22001036m.g I 0.428
PAS_chr2-1_0017 Komagataella pastoris PAS_chr2-1_0017 I 0.433
PGTG_17717 Puccinia graminis PGTG_17717 N 0.416
PGUG_05440 Candida guilliermondii PGUG_05440 I 0.431
PGUG_05440 Meyerozyma guilliermondii PGUG_05440 I 0.431
PHACADRAFT_54114 Phanerochaete carnosa PHACADRAFT_54114 N 0.426
PHLGIDRAFT_46949 Phlebiopsis gigantea PHLGIDRAFT_46949 I 0.427
PIIN_01973 Piriformospora indica PIIN_01973 I 0.424
PISMIDRAFT_31667 Pisolithus microcarpus PISMIDRAFT_31667 I 0.425
PTTG_07563 Puccinia triticina PTTG_07563 N 0.416
PV08_07043 Exophiala spinifera PV08_07043 I 0.416
SAKL0B07656g Lachancea kluyveri SAKL0B07656g I 0.441
Scas_Contig614.4 Saccharomyces castellii Scas_Contig614.4 I 0.422
Scas_Contig667.28 Saccharomyces castellii Scas_Contig667.28 I 0.443
SCHCODRAFT_230584 Schizophyllum commune SCHCODRAFT_230584 I 0.422
SPAL_0001526200 Strongyloides papillosus SPAL_0001526200 I 0.429
SSTP_0001261500 Strongyloides stercoralis SSTP_0001261500 I 0.429
SU7_3656 Saccharomyces arboricola SU7_3656 I 0.435
SVE_0008400 Strongyloides venezuelensis SVE_0008400 I 0.429
TASK_0001001001 Taenia asiatica TASK_0001001001 I 0.416
TDEL_0C04960 Torulaspora delbrueckii TDEL_0C04960 I 0.429
tetur23g00840 Tetranychus urticae tetur23g00840 I 0.416
TsM_000188900 Taenia solium TsM_000188900 I 0.416
TTAC_0000238201 Hydatigera taeniaeformis TTAC_0000238201 I 0.416
TVAG_010230 Trichomonas vaginalis TVAG_010230 I 0.428
TVAG_344020 Trichomonas vaginalis TVAG_344020 I 0.461
UCREL1_2892 Eutypa lata UCREL1_2892 I 0.426
V565_060950 Rhizoctonia solani V565_060950 N 0.441
XP_002160058.1 Hydra magnipapillata XP_002160058.1 I 0.430
XP_002490896.1 Pichia pastoris XP_002490896.1 I 0.433
ROX1 Saccharomyces cerevisiae YPR065W D 0.435
ZBAI_00827 Zygosaccharomyces bailii ZBAI_00827 I 0.433
ZBAI_06138 Zygosaccharomyces bailii ZBAI_06138 I 0.433
ZYRO0D15312g Zygosaccharomyces rouxii ZYRO0D15312g I 0.433