hmg20a (Tetraodon nigroviridis)
Sox

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00505 (HMG_box) IPR000910 ENSTNIG00000008460 T329257_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Hmg20b
M02487_2.00 		Mus musculus
NNATTATWHWN
NWDWATAATNN		 PBM
Weirauch et al.(2014)
pTH8555 		0.595 0.710
For this family, TFs with SR scores > 0.415 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSTNIP00000011296 Sox 45 113

Links

Other Sox family TFs
Other Tetraodon nigroviridis TFs

177 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
AAEL010226 Aedes aegypti AAEL010226 I
AALB001175 Anopheles albimanus AALB001175 I
AATE001337 Anopheles atroparvus AATE001337 I
ACEP22357 Atta cephalotes ACEP22357 I
ACOM039284 Anopheles coluzzii ACOM039284 I
ACUA015759 Anopheles culicifacies ACUA015759 I
ACYPI003796 Acyrthosiphon pisum ACYPI003796 I
ADAC004782 Anopheles darlingi ADAC004782 I
ADIR011358 Anopheles dirus ADIR011358 I
AEPI010093 Anopheles epiroticus AEPI010093 I
AFUN010901 Anopheles funestus AFUN010901 I
AGAP008814 Anopheles gambiae AGAP008814 I
AMAM016616 Anopheles maculatus AMAM016616 I
AMEC022127 Anopheles melas AMEC022127 I
AMEM007225 Anopheles merus AMEM007225 I
AMIN007190 Anopheles minimus AMIN007190 I
AQUA004188 Anopheles quadriannulatus AQUA004188 I
ASTEI05038 Anopheles stephensi ASTEI05038 I
BGIBMGA003285 Bombyx mori BGIBMGA003285 I
Cflo_06641--XP_394032.3_APIME Camponotus floridanus Cflo_06641--XP_394032.3_APIME I
CLEC011986 Cimex lectularius CLEC011986 I
CPIJ006828 Culex quinquefasciatus CPIJ006828 I
CpipJ_CPIJ006828 Culex pipiens CpipJ_CPIJ006828 I
DAPPUDRAFT_299735 Daphnia pulex DAPPUDRAFT_299735 I
da Drosophila melanogaster FBgn0000413 D
GA18660 Drosophila pseudoobscura FBgn0078660 I
GF15779 Drosophila ananassae FBgn0092803 I
GG10122 Drosophila erecta FBgn0102433 I
GH13857 Drosophila grimshawi FBgn0121333 I
GI19105 Drosophila mojavensis FBgn0141844 I
GM18305 Drosophila sechellia FBgn0173212 I
GD23692 Drosophila simulans FBgn0195069 I
GJ15409 Drosophila virilis FBgn0202603 I
GK12476 Drosophila willistoni FBgn0214486 I
GE18936 Drosophila yakuba FBgn0236308 I
GB41727 Apis mellifera GB41727 I
Hsal_01424--XP_394032.3_APIME Harpegnathos saltator Hsal_01424--XP_394032.3_APIME I
KGM_13328 Danaus plexippus KGM_13328 I
L798_13597 Zootermopsis nevadensis L798_13597 I
LCUP014805 Lucilia cuprina LCUP014805 I
LCUP015675 Lucilia cuprina LCUP015675 I
LDEC016095 Leptinotarsa decemlineata LDEC016095 I
LLOJ002325 Lutzomyia longipalpis LLOJ002325 I
MDOA011656 Musca domestica MDOA011656 I
MESCA003205 Megaselia scalaris MESCA003205 I
NV16928 Nasonia vitripennis NV16928 I
PHUM374400 Pediculus humanus PHUM374400 I
SINV15659 Solenopsis invicta SINV15659 I
TC009743 Tribolium castaneum TC009743 I
YQE_12444 Dendroctonus ponderosae YQE_12444 I