INO (Arabidopsis lyrata)
Sox

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00505 (HMG_box) IPR000910 fgenesh1_pg.C_scaffold_1002152 T329851_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
INO
M02485_2.00 		Arabidopsis thaliana
NHNNNYRNNN
NNNYRNNNDN		 PBM
Weirauch et al.(2014)
pTH7516 		0.741 0.980
YAB5
M02486_2.00 		Arabidopsis thaliana
NNNNHRN
NYDNNNN		 PBM
Weirauch et al.(2014)
pTH7575 		0.596 0.673
YAB5
M00889_2.00 		Arabidopsis thaliana
NATRATTADNNN
NNNHTAATYATN		 PBM
Franco-Zorrilla et al.(2014)
YAB5 		0.596 0.673
YAB1
M00890_2.00 		Arabidopsis thaliana
AATAATWA
TWATTATT		 PBM
Franco-Zorrilla et al.(2014)
YAB1 		0.596 0.673
CRC
M07266_2.00 		Arabidopsis thaliana
TWATCATW
WATGATWA		 Dap-seq
OMalley et al.(2016)
CRC_col_a 		0.560 0.531
CRC
M07267_2.00 		Arabidopsis thaliana
GGTTAGTGTTTTGGAGTCGAATATGACTTG
CAAGTCATATTCGACTCCAAAACACTAACC		 Dap-seq
OMalley et al.(2016)
CRC_colamp_a 		0.560 0.531
For this family, TFs with SR scores > 0.415 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
fgenesh1_pg.C_scaffold_1002152 Sox 128 176

Links

Other Sox family TFs
Other Arabidopsis lyrata TFs

501 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
AAEL011359 Aedes aegypti AAEL011359 N
AALB003318 Anopheles albimanus AALB003318 N
AARA010518 Anopheles arabiensis AARA010518 N
AATE012701 Anopheles atroparvus AATE012701 N
ACOM037786 Anopheles coluzzii ACOM037786 N
ACUA009064 Anopheles culicifacies ACUA009064 N
ACUA021284 Anopheles culicifacies ACUA021284 N
ADAC003441 Anopheles darlingi ADAC003441 N
ADIR001048 Anopheles dirus ADIR001048 N
AEPI002999 Anopheles epiroticus AEPI002999 N
AFAF003258 Anopheles farauti AFAF003258 N
AFUN002858 Anopheles funestus AFUN002858 N
AGAP013287 Anopheles gambiae AGAP013287 N
AMEC007532 Anopheles melas AMEC007532 N
AMEM000708 Anopheles merus AMEM000708 N
AMIN005282 Anopheles minimus AMIN005282 N
ASIS002506 Anopheles sinensis ASIS002506 N
ASTEI10578 Anopheles stephensi ASTEI10578 N
CPIJ019088 Culex quinquefasciatus CPIJ019088 N
CpipJ_CPIJ019088 Culex pipiens CpipJ_CPIJ019088 N
NFAT Drosophila melanogaster FBgn0030505 N
GA10815 Drosophila pseudoobscura FBgn0070871 N
GF21808 Drosophila ananassae FBgn0098808 N
GG17798 Drosophila erecta FBgn0110020 N
GH12805 Drosophila grimshawi FBgn0120284 N
GI15077 Drosophila mojavensis FBgn0137827 N
GL22604 Drosophila persimilis FBgn0160195 N
GM17623 Drosophila sechellia FBgn0172531 N
GJ18884 Drosophila virilis FBgn0206030 N
GK24938 Drosophila willistoni FBgn0226897 N
GE17094 Drosophila yakuba FBgn0234577 N
GB45138 Apis mellifera GB45138 N
HHAL007230-PA Halyomorpha halys HHAL007230-PA N
KGM_16908 Danaus plexippus KGM_16908 N
L798_07911 Zootermopsis nevadensis L798_07911 N
LDEC006285 Leptinotarsa decemlineata LDEC006285 N
NV18092 Nasonia vitripennis NV18092 N
PHUM363570 Pediculus humanus PHUM363570 N
TC014708 Tribolium castaneum TC014708 N