GLOINDRAFT_60750 (Rhizophagus irregularis)
Sox

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00505 (HMG_box) IPR000910 GLOINDRAFT_60750 T330192_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
mat1-Mc
M11340_2.00 		Schizosaccharomyces pombe
NRMNNAACAAAGAVRYMW
AKRYBTCTTTGTTNNKYN		 Transfac
Matys et al.(2006)
F$MAT1MC_01 		0.530 0.478
mat1-Mc
M11341_2.00 		Schizosaccharomyces pombe
YYHATTGTYD
HRACAATDRR		 Transfac
Matys et al.(2006)
F$MAT1MC_02 		0.530 0.478
fmf-1
M02491_2.00 		Neurospora crassa
TCTTTGTY
RACAAAGA		 PBM
Weirauch et al.(2014)
pTH8941 		0.429 0.304
For this family, TFs with SR scores > 0.415 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ESA09314 Sox 3 71

Links

Other Sox family TFs
Other Rhizophagus irregularis TFs

501 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
BGIOSGA013920 Oryza indica BGIOSGA013920 N
BRADI1G01990 Brachypodium distachyon BRADI1G01990 N
GRMZM2G155980 Zea mays GRMZM2G155980 N
MLOC_4235 Hordeum vulgare MLOC_4235 N
OB03G47710 Oryza brachyantha OB03G47710 N
ORGLA03G0374400 Oryza glaberrima ORGLA03G0374400 N
OS03G0843700 Oryza sativa OS03G0843700 N
Pavir.J00125 Panicum virgatum Pavir.J00125 N
Pavir.J00170 Panicum virgatum Pavir.J00170 N
Sb01g001615 Sorghum bicolor Sb01g001615 N
Si034276m.g Setaria italica Si034276m.g N
Traes_5BL_BC56C7E17 Triticum aestivum Traes_5BL_BC56C7E17 N
Traes_5DL_BCD584BC0 Triticum aestivum Traes_5DL_BCD584BC0 N
TRIUR3_00919 Triticum urartu TRIUR3_00919 N