GRMZM2G116646 (Zea mays)
Sox

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00505 (HMG_box) IPR000910 GRMZM2G116646 T330331_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
YAB1
M00890_2.00 		Arabidopsis thaliana
AATAATWA
TWATTATT		 PBM
Franco-Zorrilla et al.(2014)
YAB1 		0.697 0.864
YAB5
M02486_2.00 		Arabidopsis thaliana
NNNNHRN
NYDNNNN		 PBM
Weirauch et al.(2014)
pTH7575 		0.671 0.886
YAB5
M00889_2.00 		Arabidopsis thaliana
NATRATTADNNN
NNNHTAATYATN		 PBM
Franco-Zorrilla et al.(2014)
YAB5 		0.671 0.886
CRC
M07266_2.00 		Arabidopsis thaliana
TWATCATW
WATGATWA		 Dap-seq
OMalley et al.(2016)
CRC_col_a 		0.654 0.682
CRC
M07267_2.00 		Arabidopsis thaliana
GGTTAGTGTTTTGGAGTCGAATATGACTTG
CAAGTCATATTCGACTCCAAAACACTAACC		 Dap-seq
OMalley et al.(2016)
CRC_colamp_a 		0.654 0.682
INO
M02485_2.00 		Arabidopsis thaliana
NHNNNYRNNN
NNNYRNNNDN		 PBM
Weirauch et al.(2014)
pTH7516 		0.602 0.750
For this family, TFs with SR scores > 0.415 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
GRMZM2G116646_P01 Sox 100 143
GRMZM2G116646_P02 Sox 131 174
GRMZM2G116646_P04 Sox 100 143

Links

Other Sox family TFs
Other Zea mays TFs

519 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
CGGC5_12853 Colletotrichum gloeosporioides CGGC5_12853 N
estExt_Genewise1Plus.C_110567 Neurospora discreta estExt_Genewise1Plus.C_110567 N
FGRRES_15866_M Fusarium graminearum FGRRES_15866_M N
GLRG_10274 Colletotrichum graminicola GLRG_10274 N
MAJ_07699 Metarhizium majus MAJ_07699 N
MGU_09149 Metarhizium guizhouense MGU_09149 N
PFICI_14902 Pestalotiopsis fici PFICI_14902 N
S40288_03960 Stachybotrys chartarum S40288_03960 N
UCRPA7_2621 Togninia minima UCRPA7_2621 N
X797_008957 Metarhizium robertsii X797_008957 N