GRMZM2G529859 (Zea mays)
Sox

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00505 (HMG_box) IPR000910 GRMZM2G529859 T330341_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
CRC
M07266_2.00 		Arabidopsis thaliana
TWATCATW
WATGATWA		 Dap-seq
OMalley et al.(2016)
CRC_col_a 		0.689 0.727
CRC
M07267_2.00 		Arabidopsis thaliana
GGTTAGTGTTTTGGAGTCGAATATGACTTG
CAAGTCATATTCGACTCCAAAACACTAACC		 Dap-seq
OMalley et al.(2016)
CRC_colamp_a 		0.689 0.727
YAB1
M00890_2.00 		Arabidopsis thaliana
AATAATWA
TWATTATT		 PBM
Franco-Zorrilla et al.(2014)
YAB1 		0.678 0.955
YAB5
M02486_2.00 		Arabidopsis thaliana
NNNNHRN
NYDNNNN		 PBM
Weirauch et al.(2014)
pTH7575 		0.644 0.886
YAB5
M00889_2.00 		Arabidopsis thaliana
NATRATTADNNN
NNNHTAATYATN		 PBM
Franco-Zorrilla et al.(2014)
YAB5 		0.644 0.886
INO
M02485_2.00 		Arabidopsis thaliana
NHNNNYRNNN
NNNYRNNNDN		 PBM
Weirauch et al.(2014)
pTH7516 		0.567 0.727
For this family, TFs with SR scores > 0.415 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
GRMZM2G529859_P02 Sox 132 175

Links

Other Sox family TFs
Other Zea mays TFs

521 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
AUEXF2481DRAFT_530826 Aureobasidium subglaciale AUEXF2481DRAFT_530826 N
ANIA_10911 Aspergillus nidulans CADANIAG00000243 N
Cob_07663 Colletotrichum orbiculare Cob_07663 N
FGRRES_03322 Fusarium graminearum FGRRES_03322 N
FPSE_10432 Fusarium pseudograminearum FPSE_10432 N
PMAA_051670 Talaromyces marneffei PMAA_051670 N
PMAA_051670 Penicillium marneffei PMAA_051670 N
PV04_09739 Capronia semiimmersa PV04_09739 N
SNOG_01186 Stagonospora nodorum SNOG_01186 N
SNOG_01186 Phaeosphaeria nodorum SNOG_01186 N
Z517_06958 Fonsecaea pedrosoi Z517_06958 N