GSMUA_Achr2G12850_001 (Musa acuminata)
Sox

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00505 (HMG_box) IPR000910 GSMUA_Achr2G12850_001 T330355_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
YAB1
M00890_2.00 		Arabidopsis thaliana
AATAATWA
TWATTATT		 PBM
Franco-Zorrilla et al.(2014)
YAB1 		0.730 0.886
YAB5
M02486_2.00 		Arabidopsis thaliana
NNNNHRN
NYDNNNN		 PBM
Weirauch et al.(2014)
pTH7575 		0.705 0.909
YAB5
M00889_2.00 		Arabidopsis thaliana
NATRATTADNNN
NNNHTAATYATN		 PBM
Franco-Zorrilla et al.(2014)
YAB5 		0.705 0.909
CRC
M07266_2.00 		Arabidopsis thaliana
TWATCATW
WATGATWA		 Dap-seq
OMalley et al.(2016)
CRC_col_a 		0.660 0.659
CRC
M07267_2.00 		Arabidopsis thaliana
GGTTAGTGTTTTGGAGTCGAATATGACTTG
CAAGTCATATTCGACTCCAAAACACTAACC		 Dap-seq
OMalley et al.(2016)
CRC_colamp_a 		0.660 0.659
INO
M02485_2.00 		Arabidopsis thaliana
NHNNNYRNNN
NNNYRNNNDN		 PBM
Weirauch et al.(2014)
pTH7516 		0.602 0.750
For this family, TFs with SR scores > 0.415 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
GSMUA_Achr2P12850_001 Sox 130 173

Links

Other Sox family TFs
Other Musa acuminata TFs

532 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
DUX1_HUMAN Homo sapiens DUX1_HUMAN D
DUX3_HUMAN Homo sapiens DUX3_HUMAN D
ENSCJAG00000023408 Callithrix jacchus ENSCJAG00000023408 I
ENSCSAG00000019478 Chlorocebus sabaeus ENSCSAG00000019478 I
ENSDNOG00000033746 Dasypus novemcinctus ENSDNOG00000033746 I
ENSDNOG00000041460 Dasypus novemcinctus ENSDNOG00000041460 I
DUX4 Homo sapiens ENSG00000260596 D
ENSGGOG00000023520 Gorilla gorilla ENSGGOG00000023520 I
ENSMMUG00000014712 Macaca mulatta ENSMMUG00000014712 I
ENSMMUG00000016525 Macaca mulatta ENSMMUG00000016525 I
ENSMMUG00000017616 Macaca mulatta ENSMMUG00000017616 I
ENSMMUP00000019302 Macaca fascicularis ENSMMUP00000019302 I
ENSNLEG00000016146 Nomascus leucogenys ENSNLEG00000016146 I
ENSNLEG00000018797 Nomascus leucogenys ENSNLEG00000018797 I
ENSPANG00000023553 Papio anubis ENSPANG00000023553 I
ENSPPYG00000015280 Pongo abelii ENSPPYG00000015280 I
ENSTSYG00000006219 Tarsius syrichta ENSTSYG00000006219 I
ENSTSYG00000013427 Tarsius syrichta ENSTSYG00000013427 I
ENSTSYG00000019440 Tarsius syrichta ENSTSYG00000019440 I
ENSTSYG00000019450 Tarsius syrichta ENSTSYG00000019450 I
ENSTSYG00000019459 Tarsius syrichta ENSTSYG00000019459 I
ENSTSYG00000019463 Tarsius syrichta ENSTSYG00000019463 I
ENSTSYG00000019549 Tarsius syrichta ENSTSYG00000019549 I
ENSTSYG00000019556 Tarsius syrichta ENSTSYG00000019556 I