GSMUA_Achr6G24550_001 (Musa acuminata)
Sox

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00505 (HMG_box) IPR000910 GSMUA_Achr6G24550_001 T330371_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
CRC
M07266_2.00 		Arabidopsis thaliana
TWATCATW
WATGATWA		 Dap-seq
OMalley et al.(2016)
CRC_col_a 		0.667 0.756
CRC
M07267_2.00 		Arabidopsis thaliana
GGTTAGTGTTTTGGAGTCGAATATGACTTG
CAAGTCATATTCGACTCCAAAACACTAACC		 Dap-seq
OMalley et al.(2016)
CRC_colamp_a 		0.667 0.756
YAB1
M00890_2.00 		Arabidopsis thaliana
AATAATWA
TWATTATT		 PBM
Franco-Zorrilla et al.(2014)
YAB1 		0.657 0.711
YAB5
M02486_2.00 		Arabidopsis thaliana
NNNNHRN
NYDNNNN		 PBM
Weirauch et al.(2014)
pTH7575 		0.627 0.689
YAB5
M00889_2.00 		Arabidopsis thaliana
NATRATTADNNN
NNNHTAATYATN		 PBM
Franco-Zorrilla et al.(2014)
YAB5 		0.627 0.689
INO
M02485_2.00 		Arabidopsis thaliana
NHNNNYRNNN
NNNYRNNNDN		 PBM
Weirauch et al.(2014)
pTH7516 		0.556 0.600
For this family, TFs with SR scores > 0.415 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
GSMUA_Achr6P24550_001 Sox 105 149

Links

Other Sox family TFs
Other Musa acuminata TFs

501 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Aan_R000701 Calypte anna Aan_R000701 N
Afo_R002412 Aptenodytes forsteri Afo_R002412 N
Alligator_sinensis_CCG003108.1 Alligator sinensis Alligator_sinensis_CCG003108.1 N
Brh_R006311 Buceros rhinoceros Brh_R006311 N
Cmyd_10015463 Chelonia mydas Cmyd_10015463 N
ENSAMEG00000011882 Ailuropoda melanoleuca ENSAMEG00000011882 N
ENSAPLG00000006218 Anas platyrhynchos ENSAPLG00000006218 N
GATAD2A Bos taurus ENSBTAG00000003034 N
GATAD2A Canis familiaris ENSCAFG00000014267 N
GATAD2A Callithrix jacchus ENSCJAG00000005685 N
GATAD2A Cavia porcellus ENSCPOG00000015396 N
ENSCSAG00000005096 Chlorocebus sabaeus ENSCSAG00000005096 N
GATAD2A Dasypus novemcinctus ENSDNOG00000041689 N
Gatad2a Dipodomys ordii ENSDORG00000008536 N
GATAD2A Equus caballus ENSECAG00000012875 N
ENSFALG00000009125 Ficedula albicollis ENSFALG00000009125 N
GATAD2A Felis catus ENSFCAG00000014327 N
GATAD2A Homo sapiens ENSG00000167491 N
gatad2ab Gasterosteus aculeatus ENSGACG00000013045 N
ENSGALG00000002928 Gallus gallus ENSGALG00000002928 N
GATAD2A Gorilla gorilla ENSGGOG00000005973 N
ENSGMOG00000007431 Gadus morhua ENSGMOG00000007431 N
ENSLACG00000008883 Latimeria chalumnae ENSLACG00000008883 N
GATAD2A Meleagris gallopavo ENSMGAG00000004036 N
GATAD2A Microcebus murinus ENSMICG00000015636 N
GATAD2A Myotis lucifugus ENSMLUG00000017364 N
ENSMMUG00000022298 Macaca mulatta ENSMMUG00000022298 N
GATAD2A Monodelphis domestica ENSMODG00000007189 N
ENSMPUG00000015399 Mustela putorius furo ENSMPUG00000015399 N
ENSNLEG00000006277 Nomascus leucogenys ENSNLEG00000006277 N
GATAD2A Ornithorhynchus anatinus ENSOANG00000006409 N
ENSOARG00000007874 Ovis aries ENSOARG00000007874 N
GATAD2A Oryctolagus cuniculus ENSOCUG00000017513 N
GATAD2A Otolemur garnettii ENSOGAG00000007442 N
ENSONIG00000002454 Oreochromis niloticus ENSONIG00000002454 N
gatad2ab Oryzias latipes ENSORLG00000000720 N
ENSP00000384899 Macaca fascicularis ENSP00000384899 N
ENSP00000384899-D1 Bos grunniens ENSP00000384899-D1 N
ENSPANG00000011632 Papio anubis ENSPANG00000011632 N
ENSPFOG00000002553 Poecilia formosa ENSPFOG00000002553 N
ENSPFOG00000003089 Poecilia formosa ENSPFOG00000003089 N
ENSPMAG00000000934 Petromyzon marinus ENSPMAG00000000934 N
ENSPPYG00000009769 Pongo abelii ENSPPYG00000009769 N
ENSPSIG00000015717 Pelodiscus sinensis ENSPSIG00000015717 N
GATAD2A Pan troglodytes ENSPTRG00000010739 N
GATAD2A Sorex araneus ENSSARG00000005282 N
ENSSHAG00000013178 Sarcophilus harrisii ENSSHAG00000013178 N
GATAD2A Sus scrofa ENSSSCG00000013938 N
ENSSTOG00000022640 Ictidomys tridecemlineatus ENSSTOG00000022640 N
GATAD2A Tupaia belangeri ENSTBEG00000015854 N
GATAD2A Taeniopygia guttata ENSTGUG00000013885 N
gatad2ab Tetraodon nigroviridis ENSTNIG00000013200 N
gatad2ab Takifugu rubripes ENSTRUG00000018122 N
ENSTSYG00000000285 Tarsius syrichta ENSTSYG00000000285 N
GATAD2A Tursiops truncatus ENSTTRG00000009875 N
GATAD2A Vicugna pacos ENSVPAG00000003278 N
ENSXMAG00000012323 Xiphophorus maculatus ENSXMAG00000012323 N
Gfo_R007527 Geospiza fortis Gfo_R007527 N
Myotis_brandtii_GATAD2A_10018560 Myotis brandtii Myotis_brandtii_GATAD2A_10018560 N
Ogr08049 Ophisaurus gracilis Ogr08049 N
Pvit_05963 Pogona vitticeps Pvit_05963 N
Tal_R009898 Tyto alba Tal_R009898 N
gatad2a Xenopus tropicalis XB-GENE-1015730 N
gatad2a.L Xenopus laevis XB-GENE-1015735 N
gatad2a.S Xenopus laevis XB-GENE-17340391 N