OMERI06G28030 (Oryza meridionalis)
Sox

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00505 (HMG_box) IPR000910 OMERI06G28030 T331634_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
HMG-1
M02720_2.00 		Pisum sativum
STYGTDHTY
RADHACRAS		 SELEX
Mathelier et al.(2014)
MA0044.1 		0.645 0.710
NHP6A
M01566_2.00 		Saccharomyces cerevisiae
NHRYWWWN
NWWWRYDN		 PBM
Zhu et al.(2009)
Nhp6a 		0.443 0.420
NHP6A
M08606_2.00 		Saccharomyces cerevisiae
DNDHNNWTATATADWRDNNDN
NHNNHYWHTATATAWNNDHNH		 Misc
DeBoer et al.(2011)
YPR052C_879 		0.443 0.420
NHP6B
M01565_2.00 		Saccharomyces cerevisiae
NNWHWRYDNN
NNHRYWDWNN		 PBM
Zhu et al.(2009)
Nhp6b 		0.437 0.391
NHP6B
M08603_2.00 		Saccharomyces cerevisiae
HNTHHNWWTATAWWWWRNDN
NHNYWWWWTATAWWNDDAND		 Misc
DeBoer et al.(2011)
YBR089C-A_792 		0.437 0.391
For this family, TFs with SR scores > 0.415 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
OMERI06G28030.1 Sox 42 111

Links

Other Sox family TFs
Other Oryza meridionalis TFs

449 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Aan_R003668 Calypte anna Aan_R003668 I 0.000
Aan_R014758 Calypte anna Aan_R014758 I 0.000
Afo_R004007 Aptenodytes forsteri Afo_R004007 I 0.000
Afo_R008251 Aptenodytes forsteri Afo_R008251 I 0.000
Alligator_sinensis_CCG011250.1 Alligator sinensis Alligator_sinensis_CCG011250.1 I 0.000
Alligator_sinensis_CCG014066.1 Alligator sinensis Alligator_sinensis_CCG014066.1 I 0.000
Brh_R001493 Buceros rhinoceros Brh_R001493 I 0.000
Brh_R005182 Buceros rhinoceros Brh_R005182 I 0.000
Cmyd_10009615 Chelonia mydas Cmyd_10009615 I 0.000
Cmyd_10021057 Chelonia mydas Cmyd_10021057 I 0.000
ZNF281 Anolis carolinensis ENSACAG00000006286 I 0.000
ENSAMEG00000004258 Ailuropoda melanoleuca ENSAMEG00000004258 I 0.000
ENSAMXG00000006245 Astyanax mexicanus ENSAMXG00000006245 I 0.000
ENSAMXG00000015147 Astyanax mexicanus ENSAMXG00000015147 I 0.000
ENSAPLG00000008859 Anas platyrhynchos ENSAPLG00000008859 I 0.000
ZNF148 Bos taurus ENSBTAG00000040031 I 0.000
ZNF148 Canis familiaris ENSCAFG00000012574 I 0.000
ZNF281 Choloepus hoffmanni ENSCHOG00000004074 I 0.000
ZNF281 Callithrix jacchus ENSCJAG00000005104 I 0.000
ZNF148 Callithrix jacchus ENSCJAG00000006741 I 0.000
ENSCSAG00000000250 Chlorocebus sabaeus ENSCSAG00000000250 I 0.000
znf281a Danio rerio ENSDARG00000000567 I 0.000
znf281b Danio rerio ENSDARG00000035910 I 0.000
ZNF148 Dasypus novemcinctus ENSDNOG00000000280 I 0.000
ZNF281 Dasypus novemcinctus ENSDNOG00000016981 I 0.000
Zfp281 Dipodomys ordii ENSDORG00000002833 I 0.000
ENSDORG00000003955 Dipodomys ordii ENSDORG00000003955 I 0.000
ZNF148 Equus caballus ENSECAG00000013557 I 0.000
ZNF281 Equus caballus ENSECAG00000024354 I 0.000
ZNF281 Erinaceus europaeus ENSEEUG00000011443 I 0.000
ZNF148 Echinops telfairi ENSETEG00000002856 I 0.000
ENSFALG00000013520 Ficedula albicollis ENSFALG00000013520 I 0.000
ENSFALG00000014467 Ficedula albicollis ENSFALG00000014467 I 0.000
ZNF148 Felis catus ENSFCAG00000026852 I 0.000
ZNF281 Felis catus ENSFCAG00000028447 I 0.000
ZNF281 Homo sapiens ENSG00000162702 D 0.000
ZNF148 Homo sapiens ENSG00000163848 D 0.000
znf281b Gasterosteus aculeatus ENSGACG00000006858 I 0.000
znf281a Gasterosteus aculeatus ENSGACG00000009536 I 0.000
ZNF148 Gallus gallus ENSGALG00000012049 I 0.000
ZNF281 Gorilla gorilla ENSGGOG00000010349 I 0.000
ENSGMOG00000001704 Gadus morhua ENSGMOG00000001704 I 0.000
ENSGMOG00000008854 Gadus morhua ENSGMOG00000008854 I 0.000
ENSLACG00000014572 Latimeria chalumnae ENSLACG00000014572 I 0.000
ZNF148 Loxodonta africana ENSLAFG00000016025 I 0.000
ENSLOCG00000002769 Lepisosteus oculatus ENSLOCG00000002769 I 0.000
ENSLOCG00000011584 Lepisosteus oculatus ENSLOCG00000011584 I 0.000
ENSMEUG00000011709 Macropus eugenii ENSMEUG00000011709 I 0.000
ZNF281 Microcebus murinus ENSMICG00000001070 I 0.000
ZNF148 Macaca mulatta ENSMMUG00000001169 I 0.000
ZNF281 Macaca mulatta ENSMMUG00000007334 I 0.000
ZNF281 Monodelphis domestica ENSMODG00000012840 I 0.000
ZNF148 Monodelphis domestica ENSMODG00000018374 I 0.000
ENSMPUG00000004162 Mustela putorius furo ENSMPUG00000004162 I 0.000
ENSMPUG00000019246 Mustela putorius furo ENSMPUG00000019246 I 0.000
Zfp148 Mus musculus ENSMUSG00000022811 I 0.000
Zfp281 Mus musculus ENSMUSG00000041483 D 0.000
ENSNLEG00000000773 Nomascus leucogenys ENSNLEG00000000773 I 0.000
ENSNLEG00000018067 Nomascus leucogenys ENSNLEG00000018067 I 0.000
ZNF281 Ornithorhynchus anatinus ENSOANG00000004857 I 0.000
ENSOARG00000020237 Ovis aries ENSOARG00000020237 I 0.000
ZNF281 Oryctolagus cuniculus ENSOCUG00000010120 I 0.000
ZNF281 Otolemur garnettii ENSOGAG00000010366 I 0.000
ZNF148 Otolemur garnettii ENSOGAG00000013652 I 0.000
ENSONIG00000000839 Oreochromis niloticus ENSONIG00000000839 I 0.000
ENSONIG00000004240 Oreochromis niloticus ENSONIG00000004240 I 0.000
ENSONIG00000016453 Oreochromis niloticus ENSONIG00000016453 I 0.000
znf281a Oryzias latipes ENSORLG00000002799 I 0.000
znf281b Oryzias latipes ENSORLG00000005292 I 0.000
ENSP00000356322 Macaca fascicularis ENSP00000356322 I 0.000
ENSP00000356322-D1 Bos grunniens ENSP00000356322-D1 I 0.000
ENSP00000420448 Macaca fascicularis ENSP00000420448 I 0.000
ENSP00000420448-D1 Bos grunniens ENSP00000420448-D1 I 0.000
ENSPANG00000004284 Papio anubis ENSPANG00000004284 I 0.000
ENSPANG00000017386 Papio anubis ENSPANG00000017386 I 0.000
ENSPFOG00000000851 Poecilia formosa ENSPFOG00000000851 I 0.000
ENSPFOG00000004115 Poecilia formosa ENSPFOG00000004115 I 0.000
ENSPFOG00000008024 Poecilia formosa ENSPFOG00000008024 I 0.000
ENSPPYG00000013462 Pongo abelii ENSPPYG00000013462 I 0.000
ENSPSIG00000003614 Pelodiscus sinensis ENSPSIG00000003614 I 0.000
ZNF281 Pan troglodytes ENSPTRG00000015318 I 0.000
ZNF148 Pteropus vampyrus ENSPVAG00000006133 I 0.000
Zfp148 Rattus norvegicus ENSRNOG00000001789 I 0.000
Zfp281 Rattus norvegicus ENSRNOG00000058643 I 0.000
ZNF148 Sorex araneus ENSSARG00000007257 I 0.000
ENSSHAG00000013855 Sarcophilus harrisii ENSSHAG00000013855 I 0.000
ZNF281 Sus scrofa ENSSSCG00000010911 I 0.000
ZNF148 Sus scrofa ENSSSCG00000011858 I 0.000
ENSSTOG00000027082 Ictidomys tridecemlineatus ENSSTOG00000027082 I 0.000
ZNF148 Tupaia belangeri ENSTBEG00000008435 I 0.000
ZNF148 Taeniopygia guttata ENSTGUG00000004010 I 0.000
ZNF281 Taeniopygia guttata ENSTGUG00000004438 I 0.000
znf281a Tetraodon nigroviridis ENSTNIG00000016430 I 0.000
znf281b Tetraodon nigroviridis ENSTNIG00000018917 I 0.000
znf281b Takifugu rubripes ENSTRUG00000008207 I 0.000
znf281a Takifugu rubripes ENSTRUG00000016619 I 0.000
ENSTSYG00000007604 Tarsius syrichta ENSTSYG00000007604 I 0.000
ZNF281 Tursiops truncatus ENSTTRG00000004326 I 0.000
ZNF148 Tursiops truncatus ENSTTRG00000014714 I 0.000
Gfo_R001184 Geospiza fortis Gfo_R001184 I 0.000
Gfo_R006633 Geospiza fortis Gfo_R006633 I 0.000
Ogr00130 Ophisaurus gracilis Ogr00130 I 0.000
Pvit_14619 Pogona vitticeps Pvit_14619 I 0.000
Tal_R010256 Tyto alba Tal_R010256 I 0.000
znf281 Xenopus tropicalis XB-GENE-5933312 I 0.000
znf148 Xenopus tropicalis XB-GENE-996852 I 0.000