ORUFI07G03450 (Oryza rufipogon)
Sox

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00505 (HMG_box) IPR000910 ORUFI07G03450 T331696_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
YAB1
M00890_2.00 		Arabidopsis thaliana
AATAATWA
TWATTATT		 PBM
Franco-Zorrilla et al.(2014)
YAB1 		0.737 0.867
YAB5
M02486_2.00 		Arabidopsis thaliana
NNNNHRN
NYDNNNN		 PBM
Weirauch et al.(2014)
pTH7575 		0.707 0.822
YAB5
M00889_2.00 		Arabidopsis thaliana
NATRATTADNNN
NNNHTAATYATN		 PBM
Franco-Zorrilla et al.(2014)
YAB5 		0.707 0.822
CRC
M07266_2.00 		Arabidopsis thaliana
TWATCATW
WATGATWA		 Dap-seq
OMalley et al.(2016)
CRC_col_a 		0.660 0.711
CRC
M07267_2.00 		Arabidopsis thaliana
GGTTAGTGTTTTGGAGTCGAATATGACTTG
CAAGTCATATTCGACTCCAAAACACTAACC		 Dap-seq
OMalley et al.(2016)
CRC_colamp_a 		0.660 0.711
INO
M02485_2.00 		Arabidopsis thaliana
NHNNNYRNNN
NNNYRNNNDN		 PBM
Weirauch et al.(2014)
pTH7516 		0.596 0.689
For this family, TFs with SR scores > 0.415 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ORUFI07G03450.1 Sox 109 153

Links

Other Sox family TFs
Other Oryza rufipogon TFs

532 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
AAEL008832 Aedes aegypti AAEL008832 I 0.000
AALB008878 Anopheles albimanus AALB008878 I 0.000
AARA006907 Anopheles arabiensis AARA006907 I 0.000
AATE000717 Anopheles atroparvus AATE000717 I 0.000
ACEP19737 Atta cephalotes ACEP19737 I 0.000
ACUA012004 Anopheles culicifacies ACUA012004 I 0.000
ACYPI005943 Acyrthosiphon pisum ACYPI005943 I 0.000
ADAC006994 Anopheles darlingi ADAC006994 I 0.000
ADIR002427 Anopheles dirus ADIR002427 I 0.000
AFAF006655 Anopheles farauti AFAF006655 I 0.000
AFUN001697 Anopheles funestus AFUN001697 I 0.000
AGAP013178 Anopheles gambiae AGAP013178 I 0.000
AMAM012648 Anopheles maculatus AMAM012648 I 0.000
AMEC021917 Anopheles melas AMEC021917 I 0.000
AMIN003345 Anopheles minimus AMIN003345 I 0.000
Aqu1.218417 Amphimedon queenslandica Aqu1.218417 I 0.000
AQUA002332 Anopheles quadriannulatus AQUA002332 I 0.000
ASIS003979 Anopheles sinensis ASIS003979 I 0.000
ASTEI05563 Anopheles stephensi ASTEI05563 I 0.000
BGIBMGA008311 Bombyx mori BGIBMGA008311 I 0.000
BGLB008394 Biomphalaria glabrata BGLB008394 I 0.000
CapteG102038 Capitella teleta CapteG102038 I 0.000
Cflo_06973--XP_625198.2_APIME Camponotus floridanus Cflo_06973--XP_625198.2_APIME I 0.000
CGI_10011126 Crassostrea gigas CGI_10011126 I 0.000
CLEC003208 Cimex lectularius CLEC003208 I 0.000
Cmyd_10013867 Chelonia mydas Cmyd_10013867 I 0.000
CPIJ002020 Culex quinquefasciatus CPIJ002020 I 0.000
CpipJ_CPIJ002020 Culex pipiens CpipJ_CPIJ002020 I 0.000
DAPPUDRAFT_8207 Daphnia pulex DAPPUDRAFT_8207 I 0.000
FOXN3 Anolis carolinensis ENSACAG00000012791 I 0.000
FOXN2 Anolis carolinensis ENSACAG00000014236 I 0.000
ENSAMEG00000001627 Ailuropoda melanoleuca ENSAMEG00000001627 I 0.000
ENSAMEG00000006413 Ailuropoda melanoleuca ENSAMEG00000006413 I 0.000
ENSAMXG00000001149 Astyanax mexicanus ENSAMXG00000001149 I 0.000
ENSAMXG00000008216 Astyanax mexicanus ENSAMXG00000008216 I 0.000
ENSAMXG00000009484 Astyanax mexicanus ENSAMXG00000009484 I 0.000
ENSAMXG00000018596 Astyanax mexicanus ENSAMXG00000018596 I 0.000
ENSAPLG00000009060 Anas platyrhynchos ENSAPLG00000009060 I 0.000
ENSAPLG00000016372 Anas platyrhynchos ENSAPLG00000016372 I 0.000
FOXN2 Bos taurus ENSBTAG00000015151 I 0.000
ENSBTAG00000046684 Bos taurus ENSBTAG00000046684 I 0.000
FOXN3 Canis familiaris ENSCAFG00000011068 I 0.000
ENSCAFG00000017486 Canis familiaris ENSCAFG00000017486 I 0.000
FOXN2 Canis familiaris ENSCAFG00000029603 I 0.000
FOXN2 Choloepus hoffmanni ENSCHOG00000000109 I 0.000
foxn2/3 Ciona intestinalis ENSCING00000001109 I 0.000
FOXN2 Callithrix jacchus ENSCJAG00000010894 I 0.000
FOXN3 Callithrix jacchus ENSCJAG00000017620 I 0.000
ENSCJAG00000032477 Callithrix jacchus ENSCJAG00000032477 I 0.000
ENSCJAG00000033311 Callithrix jacchus ENSCJAG00000033311 I 0.000
ENSCJAG00000033966 Callithrix jacchus ENSCJAG00000033966 I 0.000
ENSCJAG00000034742 Callithrix jacchus ENSCJAG00000034742 I 0.000
FOXN3 Cavia porcellus ENSCPOG00000004079 I 0.000
ENSCPOG00000026162 Cavia porcellus ENSCPOG00000026162 I 0.000
ENSCSAG00000013601 Chlorocebus sabaeus ENSCSAG00000013601 I 0.000
ENSCSAVG00000007298 Ciona savignyi ENSCSAVG00000007298 I 0.000
foxn3 Danio rerio ENSDARG00000012833 I 0.000
ches1 Danio rerio ENSDARG00000043553 I 0.000
foxn2b Danio rerio ENSDARG00000045105 I 0.000
CABZ01056727.1 Danio rerio ENSDARG00000055574 I 0.000
si:ch211-145o7.3 Danio rerio ENSDARG00000061548 I 0.000
FOXN3 Dasypus novemcinctus ENSDNOG00000003188 I 0.000
FOXN2 Dasypus novemcinctus ENSDNOG00000035609 I 0.000
Foxn2 Dipodomys ordii ENSDORG00000007020 I 0.000
ENSDORG00000007387 Dipodomys ordii ENSDORG00000007387 I 0.000
FOXN2 Equus caballus ENSECAG00000008390 I 0.000
FOXN3 Equus caballus ENSECAG00000026917 I 0.000
ENSEEUG00000008958 Erinaceus europaeus ENSEEUG00000008958 I 0.000
FOXN2 Erinaceus europaeus ENSEEUG00000015228 I 0.000
FOXN2 Echinops telfairi ENSETEG00000007413 I 0.000
ENSFALG00000011112 Ficedula albicollis ENSFALG00000011112 I 0.000
ENSFALG00000012332 Ficedula albicollis ENSFALG00000012332 I 0.000
FOXN3 Felis catus ENSFCAG00000012929 I 0.000
FOXN2 Felis catus ENSFCAG00000022828 I 0.000
FOXN3 Homo sapiens ENSG00000053254 D 0.000
FOXN2 Homo sapiens ENSG00000170802 D 0.000
foxn2b Gasterosteus aculeatus ENSGACG00000005486 I 0.000
ENSGACG00000017049 Gasterosteus aculeatus ENSGACG00000017049 I 0.000
FOXN3 Gallus gallus ENSGALG00000010665 I 0.000
FOXN2 Gorilla gorilla ENSGGOG00000008171 I 0.000
ENSGGOG00000016732 Gorilla gorilla ENSGGOG00000016732 I 0.000
FOXN3 Gorilla gorilla ENSGGOG00000023852 I 0.000
ENSGMOG00000003346 Gadus morhua ENSGMOG00000003346 I 0.000
ENSGMOG00000016028 Gadus morhua ENSGMOG00000016028 I 0.000
ENSGMOG00000018188 Gadus morhua ENSGMOG00000018188 I 0.000
ENSLACG00000006234 Latimeria chalumnae ENSLACG00000006234 I 0.000
ENSLACG00000013808 Latimeria chalumnae ENSLACG00000013808 I 0.000
ENSLACG00000015298 Latimeria chalumnae ENSLACG00000015298 I 0.000
FOXN2 Loxodonta africana ENSLAFG00000012466 I 0.000
FOXN3 Loxodonta africana ENSLAFG00000016005 I 0.000
ENSLOCG00000000880 Lepisosteus oculatus ENSLOCG00000000880 I 0.000
ENSLOCG00000008977 Lepisosteus oculatus ENSLOCG00000008977 I 0.000
ENSLOCG00000016292 Lepisosteus oculatus ENSLOCG00000016292 I 0.000
ENSMEUG00000000214 Macropus eugenii ENSMEUG00000000214 I 0.000
FOXN2 Meleagris gallopavo ENSMGAG00000005062 I 0.000
FOXN3 Meleagris gallopavo ENSMGAG00000013026 I 0.000
FOXN3 Myotis lucifugus ENSMLUG00000008780 I 0.000
FOXN2 Myotis lucifugus ENSMLUG00000017567 I 0.000
FOXN3 Macaca mulatta ENSMMUG00000019898 I 0.000
FOXN2 Macaca mulatta ENSMMUG00000020677 I 0.000
FOXN2 Monodelphis domestica ENSMODG00000001169 I 0.000
FOXN3 Monodelphis domestica ENSMODG00000003001 I 0.000
ENSMPUG00000008174 Mustela putorius furo ENSMPUG00000008174 I 0.000
ENSMPUG00000010993 Mustela putorius furo ENSMPUG00000010993 I 0.000
Foxn3 Mus musculus ENSMUSG00000033713 I 0.000
Foxn2 Mus musculus ENSMUSG00000034998 I 0.000
ENSNLEG00000008649 Nomascus leucogenys ENSNLEG00000008649 I 0.000
ENSNLEG00000016989 Nomascus leucogenys ENSNLEG00000016989 I 0.000
ENSOANG00000003851 Ornithorhynchus anatinus ENSOANG00000003851 I 0.000
ENSOARG00000003363 Ovis aries ENSOARG00000003363 I 0.000
ENSOARG00000004763 Ovis aries ENSOARG00000004763 I 0.000
FOXN3 Oryctolagus cuniculus ENSOCUG00000004392 I 0.000
FOXN2 Oryctolagus cuniculus ENSOCUG00000009784 I 0.000
FOXN3 Otolemur garnettii ENSOGAG00000001733 I 0.000
FOXN2 Otolemur garnettii ENSOGAG00000011745 I 0.000
ENSONIG00000001158 Oreochromis niloticus ENSONIG00000001158 I 0.000
ENSONIG00000009856 Oreochromis niloticus ENSONIG00000009856 I 0.000
FOXN3 Ochotona princeps ENSOPRG00000002931 I 0.000
FOXN2 Ochotona princeps ENSOPRG00000007661 I 0.000
ches1 Oryzias latipes ENSORLG00000010729 I 0.000
foxn2b Oryzias latipes ENSORLG00000011005 I 0.000
ENSP00000261302 Macaca fascicularis ENSP00000261302 I 0.000
ENSP00000343633 Macaca fascicularis ENSP00000343633 I 0.000
ENSP00000394031-D1 Bos grunniens ENSP00000394031-D1 I 0.000
ENSPANG00000013263 Papio anubis ENSPANG00000013263 I 0.000
ENSPANG00000016397 Papio anubis ENSPANG00000016397 I 0.000
FOXN2 Procavia capensis ENSPCAG00000005254 I 0.000
FOXN3 Procavia capensis ENSPCAG00000013761 I 0.000
ENSPFOG00000001305 Poecilia formosa ENSPFOG00000001305 I 0.000
ENSPFOG00000015286 Poecilia formosa ENSPFOG00000015286 I 0.000
ENSPFOG00000021830 Poecilia formosa ENSPFOG00000021830 I 0.000
ENSPMAG00000007171 Petromyzon marinus ENSPMAG00000007171 I 0.000
ENSPPYG00000012423 Pongo abelii ENSPPYG00000012423 I 0.000
ENSPSIG00000013517 Pelodiscus sinensis ENSPSIG00000013517 I 0.000
FOXN3 Pan troglodytes ENSPTRG00000006614 I 0.000
FOXN2 Pan troglodytes ENSPTRG00000011908 I 0.000
FOXN3 Pteropus vampyrus ENSPVAG00000002967 I 0.000
FOXN2 Pteropus vampyrus ENSPVAG00000003737 I 0.000
Foxn3 Rattus norvegicus ENSRNOG00000004709 I 0.000
Foxn2 Rattus norvegicus ENSRNOG00000040110 I 0.000
FOXN2 Sorex araneus ENSSARG00000003696 I 0.000
ENSSHAG00000001461 Sarcophilus harrisii ENSSHAG00000001461 I 0.000
ENSSHAG00000010850 Sarcophilus harrisii ENSSHAG00000010850 I 0.000
FOXN3 Sus scrofa ENSSSCG00000002429 I 0.000
FOXN2 Sus scrofa ENSSSCG00000029593 I 0.000
ENSSTOG00000000862 Ictidomys tridecemlineatus ENSSTOG00000000862 I 0.000
ENSSTOG00000014643 Ictidomys tridecemlineatus ENSSTOG00000014643 I 0.000
ENSTGUG00000012441 Taeniopygia guttata ENSTGUG00000012441 I 0.000
ENSTNIG00000002057 Tetraodon nigroviridis ENSTNIG00000002057 I 0.000
ENSTNIG00000009703 Tetraodon nigroviridis ENSTNIG00000009703 I 0.000
foxn2b Tetraodon nigroviridis ENSTNIG00000016601 I 0.000
ches1 Takifugu rubripes ENSTRUG00000003497 I 0.000
foxn2b Takifugu rubripes ENSTRUG00000013724 I 0.000
ENSTSYG00000014704 Tarsius syrichta ENSTSYG00000014704 I 0.000
FOXN3 Tursiops truncatus ENSTTRG00000000817 I 0.000
FOXN2 Vicugna pacos ENSVPAG00000009218 I 0.000
ENSXMAG00000001667 Xiphophorus maculatus ENSXMAG00000001667 I 0.000
ENSXMAG00000013148 Xiphophorus maculatus ENSXMAG00000013148 I 0.000
CHES-1-like Drosophila melanogaster FBgn0029504 D 0.000
GF21122 Drosophila ananassae FBgn0098127 I 0.000
GG17614 Drosophila erecta FBgn0109837 I 0.000
GH12836 Drosophila grimshawi FBgn0120315 I 0.000
GI14920 Drosophila mojavensis FBgn0137671 I 0.000
GL14605 Drosophila persimilis FBgn0152210 I 0.000
GM17463 Drosophila sechellia FBgn0172373 I 0.000
GJ18953 Drosophila virilis FBgn0206099 I 0.000
GK19775 Drosophila willistoni FBgn0221773 I 0.000
GE17515 Drosophila yakuba FBgn0234975 I 0.000
GA27773 Drosophila pseudoobscura FBgn0249137 I 0.000
GB45298 Apis mellifera GB45298 I 0.000
gw.10.104.1 Branchiostoma floridae gw.10.104.1 I 0.000
gw.384.13.1 Branchiostoma floridae gw.384.13.1 I 0.000
HMEL010214 Heliconius melpomene HMEL010214 I 0.000
Hsal_12079--XP_625198.2_APIME Harpegnathos saltator Hsal_12079--XP_625198.2_APIME I 0.000
KGM_12006 Danaus plexippus KGM_12006 I 0.000
L798_02484 Zootermopsis nevadensis L798_02484 I 0.000
LCUP017282 Lucilia cuprina LCUP017282 I 0.000
LLOJ006903 Lutzomyia longipalpis LLOJ006903 I 0.000
LotgiG138633 Lottia gigantea LotgiG138633 I 0.000
MDOA011809 Musca domestica MDOA011809 I 0.000
ML077613a Mnemiopsis leidyi ML077613a I 0.000
Myotis_brandtii_FOXN2_10033482 Myotis brandtii Myotis_brandtii_FOXN2_10033482 I 0.000
Myotis_brandtii_FOXN3_10022354 Myotis brandtii Myotis_brandtii_FOXN3_10022354 I 0.000
NEMVEDRAFT_v1g67209 Nematostella vectensis NEMVEDRAFT_v1g67209 D 0.000
NV15444 Nasonia vitripennis NV15444 I 0.000
Ocbimv22027168m.g Octopus bimaculoides Ocbimv22027168m.g I 0.000
Ogr01321 Ophisaurus gracilis Ogr01321 I 0.000
Ogr07715 Ophisaurus gracilis Ogr07715 I 0.000
PHUM603440 Pediculus humanus PHUM603440 I 0.000
Pvit_15105 Pogona vitticeps Pvit_15105 I 0.000
Sakowv30028653m.g Saccoglossus kowalevskii Sakowv30028653m.g I 0.000
SINV12530 Solenopsis invicta SINV12530 I 0.000
SMAR014430 Strigamia maritima SMAR014430 I 0.000
SPU_015243 Strongylocentrotus purpuratus SPU_015243 I 0.000
TC030764 Tribolium castaneum TC030764 I 0.000
tetur19g01540 Tetranychus urticae tetur19g01540 I 0.000
TriadG17577 Trichoplax adhaerens TriadG17577 D 0.000
foxn3 Xenopus tropicalis XB-GENE-483117 I 0.000
foxn3.L Xenopus laevis XB-GENE-6448222 I 0.000
foxn3.S Xenopus laevis XB-GENE-864945 I 0.000
foxn2 Xenopus tropicalis XB-GENE-952918 I 0.000
foxn2.S Xenopus laevis XB-GENE-952923 I 0.000
YQE_02614 Dendroctonus ponderosae YQE_02614 I 0.000
YQE_02630 Dendroctonus ponderosae YQE_02630 I 0.000
YQE_03399 Dendroctonus ponderosae YQE_03399 I 0.000