CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
Home
Tools
View cart
Bulk downloads
Database stats
Contact us
Help
Update Log
FAQ
Links
How to cite
PGSC0003DMG402018896
(
Solanum tuberosum
)
Sox
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00505 (HMG_box)
IPR000910
PGSC0003DMG402018896
T331860_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No TFs with similar DNA binding domains
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
PGSC0003DMT400048639
Sox
157
224
PKPNRSGYNFFFAEHYATLKPSYQGQERAISKRIGILWSRLTEAEKQVYQEKGVRDKERYRAEMLEYQ
Links
Other
Sox
family TFs
Other
Solanum tuberosum
TFs
11 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
BGIOSGA025912
Oryza indica
BGIOSGA025912
N
BRADI1G25230
Brachypodium distachyon
BRADI1G25230
N
MLOC_67972
Hordeum vulgare
MLOC_67972
N
OB07G23820
Oryza brachyantha
OB07G23820
N
OS07G0549600
Oryza sativa
OS07G0549600
N