POPTR_0001s10410 (Populus trichocarpa)
Sox

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00505 (HMG_box) IPR000910 POPTR_0001s10410 T332115_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
HMGB13
M07268_2.00 		Arabidopsis thaliana
HNHYNBNNNHDYCDCCGCCRB
VYGGCGGHGRHDNNNVNRDND		 Dap-seq
OMalley et al.(2016)
3XHMGBOX1_col_a 		0.510 0.688
HMGB13
M07269_2.00 		Arabidopsis thaliana
GGHGGHGGYGGHGGN
NCCDCCRCCDCCDCC		 Dap-seq
OMalley et al.(2016)
3XHMGBOX1_colamp_a 		0.510 0.688
For this family, TFs with SR scores > 0.415 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
POPTR_0001s10410.1 Sox 180 248
POPTR_0001s10410.1 Sox 299 365
POPTR_0001s10410.1 Sox 424 492

Links

Other Sox family TFs
Other Populus trichocarpa TFs

55 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Aan_R004209 Calypte anna Aan_R004209 I
Aan_R011063 Calypte anna Aan_R011063 I
Afo_R012154 Aptenodytes forsteri Afo_R012154 I
Afo_R013359 Aptenodytes forsteri Afo_R013359 I
Alligator_sinensis_CCG004039.1 Alligator sinensis Alligator_sinensis_CCG004039.1 I
Brh_R001640 Buceros rhinoceros Brh_R001640 I
Brh_R004433 Buceros rhinoceros Brh_R004433 I
Cmyd_10017697 Chelonia mydas Cmyd_10017697 I
IRF1 Anolis carolinensis ENSACAG00000012699 I
ENSAMEG00000008380 Ailuropoda melanoleuca ENSAMEG00000008380 I
ENSAMEG00000017694 Ailuropoda melanoleuca ENSAMEG00000017694 I
ENSAMXG00000005897 Astyanax mexicanus ENSAMXG00000005897 I
ENSAMXG00000010595 Astyanax mexicanus ENSAMXG00000010595 I
ENSAPLG00000009708 Anas platyrhynchos ENSAPLG00000009708 I
ENSAPLG00000015442 Anas platyrhynchos ENSAPLG00000015442 I
IRF2 Bos taurus ENSBTAG00000010002 I
IRF1 Bos taurus ENSBTAG00000031231 I
ENSBTAP00000013193-D1 Bos grunniens ENSBTAP00000013193-D1 I
IRF1 Canis familiaris ENSCAFG00000000851 I
IRF2 Canis familiaris ENSCAFG00000007761 I
IRF2 Callithrix jacchus ENSCJAG00000005731 I
IRF1 Callithrix jacchus ENSCJAG00000013013 I
IRF1 Cavia porcellus ENSCPOG00000004848 I
IRF2 Cavia porcellus ENSCPOG00000013097 I
ENSCSAG00000003010 Chlorocebus sabaeus ENSCSAG00000003010 I
ENSCSAG00000013810 Chlorocebus sabaeus ENSCSAG00000013810 I
irf2a Danio rerio ENSDARG00000007387 I
irf2 Danio rerio ENSDARG00000040465 I
txndc15 Danio rerio ENSDARG00000043249 I
irf1a Danio rerio ENSDARG00000043492 I
IRF1 Dasypus novemcinctus ENSDNOG00000035479 I
ENSDORG00000003799 Dipodomys ordii ENSDORG00000003799 I
IRF2 Equus caballus ENSECAG00000007508 I
IRF1 Equus caballus ENSECAG00000017794 I
IRF2 Erinaceus europaeus ENSEEUG00000004690 I
IRF1 Erinaceus europaeus ENSEEUG00000013362 I
IRF2 Echinops telfairi ENSETEG00000003181 I
ENSFALG00000011727 Ficedula albicollis ENSFALG00000011727 I
ENSFALG00000013442 Ficedula albicollis ENSFALG00000013442 I
IRF1 Felis catus ENSFCAG00000013318 I
IRF2 Felis catus ENSFCAG00000030144 I
IRF1 Homo sapiens ENSG00000125347 D
IRF2 Homo sapiens ENSG00000168310 D
irf2 Gasterosteus aculeatus ENSGACG00000018763 I
txndc15 Gasterosteus aculeatus ENSGACG00000020876 I
IRF1 Gallus gallus ENSGALG00000006785 I
IRF2 Gallus gallus ENSGALG00000010642 I
IRF1 Gorilla gorilla ENSGGOG00000013927 I
IRF2 Gorilla gorilla ENSGGOG00000016559 I
ENSGMOG00000016692 Gadus morhua ENSGMOG00000016692 I
ENSLACG00000001546 Latimeria chalumnae ENSLACG00000001546 I
ENSLACG00000003594 Latimeria chalumnae ENSLACG00000003594 I
ENSLACG00000004013 Latimeria chalumnae ENSLACG00000004013 I
IRF2 Loxodonta africana ENSLAFG00000000088 I
IRF1 Loxodonta africana ENSLAFG00000007502 I
ENSLOCG00000009136 Lepisosteus oculatus ENSLOCG00000009136 I
ENSLOCG00000010331 Lepisosteus oculatus ENSLOCG00000010331 I
ENSLOCG00000013738 Lepisosteus oculatus ENSLOCG00000013738 I
ENSMEUG00000003128 Macropus eugenii ENSMEUG00000003128 I
IRF2 Meleagris gallopavo ENSMGAG00000006359 I
IRF1 Meleagris gallopavo ENSMGAG00000008932 I
IRF1 Microcebus murinus ENSMICG00000008190 I
IRF2 Microcebus murinus ENSMICG00000015506 I
IRF2 Myotis lucifugus ENSMLUG00000014246 I
IRF1 Myotis lucifugus ENSMLUG00000016545 I
IRF1 Macaca mulatta ENSMMUG00000008100 I
IRF2 Macaca mulatta ENSMMUG00000015087 I
IRF2 Monodelphis domestica ENSMODG00000004393 I
IRF1 Monodelphis domestica ENSMODG00000013963 I
ENSMPUG00000010522 Mustela putorius furo ENSMPUG00000010522 I
ENSMPUG00000011075 Mustela putorius furo ENSMPUG00000011075 I
Irf1 Mus musculus ENSMUSG00000018899 D
Irf2 Mus musculus ENSMUSG00000031627 D
ENSNLEG00000010848 Nomascus leucogenys ENSNLEG00000010848 I
ENSNLEG00000012720 Nomascus leucogenys ENSNLEG00000012720 I
IRF1 Ornithorhynchus anatinus ENSOANG00000010695 I
ENSOARG00000007443 Ovis aries ENSOARG00000007443 I
ENSOARG00000015078 Ovis aries ENSOARG00000015078 I
IRF1 Oryctolagus cuniculus ENSOCUG00000004165 I
IRF2 Oryctolagus cuniculus ENSOCUG00000009229 I
IRF2 Otolemur garnettii ENSOGAG00000010966 I
IRF1 Otolemur garnettii ENSOGAG00000015489 I
ENSONIG00000015919 Oreochromis niloticus ENSONIG00000015919 I
ENSONIG00000017217 Oreochromis niloticus ENSONIG00000017217 I
IRF2 Ochotona princeps ENSOPRG00000005398 I
txndc15 Oryzias latipes ENSORLG00000001131 I
irf2 Oryzias latipes ENSORLG00000008574 I
ENSP00000377218 Macaca fascicularis ENSP00000377218 I
ENSP00000384406 Macaca fascicularis ENSP00000384406 I
ENSP00000384406-D1 Bos grunniens ENSP00000384406-D1 I
ENSPANG00000013763 Papio anubis ENSPANG00000013763 I
ENSPANG00000014875 Papio anubis ENSPANG00000014875 I
IRF1 Procavia capensis ENSPCAG00000017088 I
ENSPFOG00000006505 Poecilia formosa ENSPFOG00000006505 I
ENSPPYG00000015762 Pongo abelii ENSPPYG00000015762 I
ENSPSIG00000010399 Pelodiscus sinensis ENSPSIG00000010399 I
ENSPSIG00000016830 Pelodiscus sinensis ENSPSIG00000016830 I
IRF2 Pan troglodytes ENSPTRG00000016639 I
IRF1 Pan troglodytes ENSPTRG00000017216 I
IRF2 Pteropus vampyrus ENSPVAG00000007078 I
Irf1 Rattus norvegicus ENSRNOG00000008144 I
Irf2 Rattus norvegicus ENSRNOG00000009824 I
ENSSHAG00000002124 Sarcophilus harrisii ENSSHAG00000002124 I
ENSSHAG00000009209 Sarcophilus harrisii ENSSHAG00000009209 I
IRF1 Sus scrofa ENSSSCG00000014277 I
IRF2 Sus scrofa ENSSSCG00000015782 I
ENSSTOG00000009857 Ictidomys tridecemlineatus ENSSTOG00000009857 I
IRF1 Taeniopygia guttata ENSTGUG00000001375 I
IRF2 Taeniopygia guttata ENSTGUG00000006662 I
irf2 Takifugu rubripes ENSTRUG00000001842 I
IRF1 Tursiops truncatus ENSTTRG00000002597 I
IRF2 Tursiops truncatus ENSTTRG00000009391 I
IRF2 Vicugna pacos ENSVPAG00000011297 I
ENSXMAG00000004071 Xiphophorus maculatus ENSXMAG00000004071 I
ENSXMAG00000011087 Xiphophorus maculatus ENSXMAG00000011087 I
Gfo_R010481 Geospiza fortis Gfo_R010481 I
Gfo_R013143 Geospiza fortis Gfo_R013143 I
Myotis_brandtii_IRF1_10032556 Myotis brandtii Myotis_brandtii_IRF1_10032556 I
Myotis_brandtii_IRF2_10027054 Myotis brandtii Myotis_brandtii_IRF2_10027054 I
Ogr17358 Ophisaurus gracilis Ogr17358 I
Pvit_12337 Pogona vitticeps Pvit_12337 I
Pvit_14395 Pogona vitticeps Pvit_14395 I
Sakowv30022795m.g Saccoglossus kowalevskii Sakowv30022795m.g I
Tal_R004238 Tyto alba Tal_R004238 I
irf2.S Xenopus laevis XB-GENE-17339545 I
irf1.S Xenopus laevis XB-GENE-17345840 I
irf1.L Xenopus laevis XB-GENE-6255163 I
irf2 Xenopus tropicalis XB-GENE-942910 I
irf2.L Xenopus laevis XB-GENE-942916 I
irf1 Xenopus tropicalis XB-GENE-942994 I