POPTR_0018s12990 (Populus trichocarpa)
Sox

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00505 (HMG_box) IPR000910 POPTR_0018s12990 T332141_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
YAB5
M02486_2.00 		Arabidopsis thaliana
NNNNHRN
NYDNNNN		 PBM
Weirauch et al.(2014)
pTH7575 		0.741 0.977
YAB5
M00889_2.00 		Arabidopsis thaliana
NATRATTADNNN
NNNHTAATYATN		 PBM
Franco-Zorrilla et al.(2014)
YAB5 		0.741 0.977
YAB1
M00890_2.00 		Arabidopsis thaliana
AATAATWA
TWATTATT		 PBM
Franco-Zorrilla et al.(2014)
YAB1 		0.707 0.909
CRC
M07266_2.00 		Arabidopsis thaliana
TWATCATW
WATGATWA		 Dap-seq
OMalley et al.(2016)
CRC_col_a 		0.630 0.682
CRC
M07267_2.00 		Arabidopsis thaliana
GGTTAGTGTTTTGGAGTCGAATATGACTTG
CAAGTCATATTCGACTCCAAAACACTAACC		 Dap-seq
OMalley et al.(2016)
CRC_colamp_a 		0.630 0.682
INO
M02485_2.00 		Arabidopsis thaliana
NHNNNYRNNN
NNNYRNNNDN		 PBM
Weirauch et al.(2014)
pTH7516 		0.596 0.750
For this family, TFs with SR scores > 0.415 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
POPTR_0018s12990.1 Sox 113 156

Links

Other Sox family TFs
Other Populus trichocarpa TFs

531 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Aan_R015007 Calypte anna Aan_R015007 N
Afo_R012887 Aptenodytes forsteri Afo_R012887 N
Brh_R000757 Buceros rhinoceros Brh_R000757 N
ENSAMEG00000019149 Ailuropoda melanoleuca ENSAMEG00000019149 N
TIGD4 Bos taurus ENSBTAG00000009161 N
TIGD4 Canis familiaris ENSCAFG00000008168 N
TIGD4 Choloepus hoffmanni ENSCHOG00000003926 N
TIGD4 Callithrix jacchus ENSCJAG00000021812 N
ENSCPOG00000022575 Cavia porcellus ENSCPOG00000022575 N
ENSCSAG00000000386 Chlorocebus sabaeus ENSCSAG00000000386 N
TIGD4 Dasypus novemcinctus ENSDNOG00000006525 N
Tigd4 Dipodomys ordii ENSDORG00000008170 N
TIGD4 Equus caballus ENSECAG00000004395 N
TIGD4 Erinaceus europaeus ENSEEUG00000001554 N
TIGD4 Echinops telfairi ENSETEG00000011110 N
TIGD4 Homo sapiens ENSG00000169989 N
TIGD4 Gorilla gorilla ENSGGOG00000011836 N
ENSLACG00000001352 Latimeria chalumnae ENSLACG00000001352 N
TIGD4 Loxodonta africana ENSLAFG00000028471 N
ENSMEUG00000006670 Macropus eugenii ENSMEUG00000006670 N
ENSMICG00000012196 Microcebus murinus ENSMICG00000012196 N
TIGD4 Myotis lucifugus ENSMLUG00000028008 N
TIGD4 Macaca mulatta ENSMMUG00000018489 N
TIGD4 Monodelphis domestica ENSMODG00000001071 N
ENSMPUG00000019997 Mustela putorius furo ENSMPUG00000019997 N
Tigd4 Mus musculus ENSMUSG00000047819 N
ENSNLEG00000005902 Nomascus leucogenys ENSNLEG00000005902 N
ENSOARG00000015061 Ovis aries ENSOARG00000015061 N
TIGD4 Otolemur garnettii ENSOGAG00000005277 N
TIGD4 Ochotona princeps ENSOPRG00000009824 N
ENSP00000355162 Macaca fascicularis ENSP00000355162 N
ENSP00000355162-D1 Bos grunniens ENSP00000355162-D1 N
ENSPANG00000002290 Papio anubis ENSPANG00000002290 N
TIGD4 Procavia capensis ENSPCAG00000014843 N
ENSPPYG00000015125 Pongo abelii ENSPPYG00000015125 N
ENSPSIG00000000540 Pelodiscus sinensis ENSPSIG00000000540 N
TIGD4 Pan troglodytes ENSPTRG00000016518 N
TIGD4 Pteropus vampyrus ENSPVAG00000013544 N
Tigd4 Rattus norvegicus ENSRNOG00000010741 N
ENSSHAG00000007826 Sarcophilus harrisii ENSSHAG00000007826 N
ENSSTOG00000020903 Ictidomys tridecemlineatus ENSSTOG00000020903 N
TIGD4 Taeniopygia guttata ENSTGUG00000005046 N
ENSTSYG00000006216 Tarsius syrichta ENSTSYG00000006216 N
TIGD4 Tursiops truncatus ENSTTRG00000016046 N
Gfo_R010567 Geospiza fortis Gfo_R010567 N
Tal_R011337 Tyto alba Tal_R011337 N