PRUPE_ppa004611mg (Prunus persica)
Sox

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00505 (HMG_box) IPR000910 PRUPE_ppa004611mg T332195_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
HMGB13
M07268_2.00 		Arabidopsis thaliana
HNHYNBNNNHDYCDCCGCCRB
VYGGCGGHGRHDNNNVNRDND		 Dap-seq
OMalley et al.(2016)
3XHMGBOX1_col_a 		0.515 0.702
HMGB13
M07269_2.00 		Arabidopsis thaliana
GGHGGHGGYGGHGGN
NCCDCCRCCDCCDCC		 Dap-seq
OMalley et al.(2016)
3XHMGBOX1_colamp_a 		0.515 0.702
For this family, TFs with SR scores > 0.415 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
EMJ11132 Sox 175 243
EMJ11132 Sox 291 357
EMJ11132 Sox 419 487

Links

Other Sox family TFs
Other Prunus persica TFs

61 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ACRE_050460 Acremonium chrysogenum ACRE_050460 N 0.000
BBA_06381 Beauveria bassiana BBA_06381 N 0.000
CCM_05767 Cordyceps militaris CCM_05767 N 0.000
CFIO01_12198 Colletotrichum fioriniae CFIO01_12198 N 0.000
CGGC5_2868 Colletotrichum gloeosporioides CGGC5_2868 N 0.000
CH063_09700 Colletotrichum higginsianum CH063_09700 N 0.000
CHGG_05609 Chaetomium globosum CHGG_05609 N 0.000
Cob_10219 Colletotrichum orbiculare Cob_10219 N 0.000
CSUB01_07638 Colletotrichum sublineola CSUB01_07638 N 0.000
CTHT_0070820 Chaetomium thermophilum CTHT_0070820 N 0.000
estExt_fgenesh1_pg.C_10531 Cryphonectria parasitica estExt_fgenesh1_pg.C_10531 N 0.000
estExt_Genewise1Plus.C_50987 Neurospora discreta estExt_Genewise1Plus.C_50987 N 0.000
e_gw1.10.97.1 Nectria haematococca e_gw1.10.97.1 N 0.000
F503_02033 Ophiostoma piceae uamh F503_02033 N 0.000
FPSE_09317 Fusarium pseudograminearum FPSE_09317 N 0.000
GGTG_08226 Gaeumannomyces graminis GGTG_08226 N 0.000
GLRG_08422 Colletotrichum graminicola GLRG_08422 N 0.000
MAC_06493 Metarhizium acridum MAC_06493 N 0.000
MAM_01636 Metarhizium album MAM_01636 N 0.000
MAPG_08020 Magnaporthe poae MAPG_08020 N 0.000
MYCTH_2303596 Myceliophthora thermophila MYCTH_2303596 N 0.000
NCU00180 Neurospora crassa NCU00180 N 0.000
NechaG46870 Fusarium solani NechaG46870 N 0.000
NEUTE1DRAFT_81874 Neurospora tetrasperma NEUTE1DRAFT_81874 N 0.000
PODANS_7_10740 Podospora anserina PODANS_7_10740 N 0.000
S40285_00400 Stachybotrys chlorohalonata S40285_00400 N 0.000
S40288_00172 Stachybotrys chartarum S40288_00172 N 0.000
THITE_2120291 Thielavia terrestris THITE_2120291 N 0.000
TRIATDRAFT_279683 Trichoderma atroviride TRIATDRAFT_279683 N 0.000
TRIREDRAFT_70547 Trichoderma reesei TRIREDRAFT_70547 N 0.000
TRIVIDRAFT_153443 Trichoderma virens TRIVIDRAFT_153443 N 0.000
X797_003355 Metarhizium robertsii X797_003355 N 0.000