Pm024077 (Prunus mume)
Sox

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00505 (HMG_box) IPR000910 Pm024077 T333842_2.00 GigaDB (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
HMGB13
M07268_2.00 		Arabidopsis thaliana
HNHYNBNNNHDYCDCCGCCRB
VYGGCGGHGRHDNNNVNRDND		 Dap-seq
OMalley et al.(2016)
3XHMGBOX1_col_a 		0.515 0.702
HMGB13
M07269_2.00 		Arabidopsis thaliana
GGHGGHGGYGGHGGN
NCCDCCRCCDCCDCC		 Dap-seq
OMalley et al.(2016)
3XHMGBOX1_colamp_a 		0.515 0.702
For this family, TFs with SR scores > 0.415 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Pm024077 Sox 175 243
Pm024077 Sox 278 344
Pm024077 Sox 406 474

Links

Other Sox family TFs
Other Prunus mume TFs

61 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ACAC_0000490701 Angiostrongylus cantonensis ACAC_0000490701 N 0.000
ACOC_0001036301 Angiostrongylus costaricensis ACOC_0001036301 N 0.000
ASIM_0001284101 Anisakis simplex ASIM_0001284101 N 0.000
ASU_05009 Ascaris suum ASU_05009 N 0.000
Bm7640 Brugia malayi Bm7640 N 0.000
CBG08165 Caenorhabditis briggsae CBG08165 N 0.000
DICVIV_09532 Dictyocaulus viviparus DICVIV_09532 N 0.000
EEL_0000412901 Elaeophora elaphi EEL_0000412901 N 0.000
EVEC_0001166801 Enterobius vermicularis EVEC_0001166801 N 0.000
HCOI00637900 Haemonchus contortus HCOI00637900 N 0.000
HPLM_0001532901 Haemonchus placei HPLM_0001532901 N 0.000
L596_g9224 Steinernema carpocapsae L596_g9224 N 0.000
L889_g25145 Steinernema feltiae L889_g25145 N 0.000
L892_g9710 Steinernema scapterisci L892_g9710 N 0.000
nAv.1.0.1.g04870 Acanthocheilonema viteae nAv.1.0.1.g04870 N 0.000
nDi.2.2.2.g01589 Dirofilaria immitis nDi.2.2.2.g01589 N 0.000
NECAME_03333 Necator americanus NECAME_03333 N 0.000
nOo.2.0.1.g00722 Onchocerca ochengi nOo.2.0.1.g00722 N 0.000
SMUV_0000944701 Syphacia muris SMUV_0000944701 N 0.000
TCLT_0000625901 Thelazia callipaeda TCLT_0000625901 N 0.000
WBGene00239750 Onchocerca volvulus WBGene00239750 N 0.000
WUBG_04888 Wuchereria bancrofti WUBG_04888 N 0.000