Pvit_02876 (Pogona vitticeps)
Sox

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00505 (HMG_box) IPR000910 Pvit_02876 T333850_2.00 GigaDB (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Cic
M00195_2.00 		Mus musculus
NNTGCTGABN
NVTCAGCANN		 PBM
Badis et al.(2009)
Cic_3454 		0.741 1.000
cic
M06452_2.00 		Drosophila melanogaster
YYCATTSA
TSAATGRR		 B1H
Zhu et al.(2011)
cic_SANGER_5_FBgn0028386 		0.680 0.768
gei-3
M00711_2.00 		Caenorhabditis elegans
NWNWMWDN
NHWKWNWN		 PBM
Narasimhan et al.(2015)
pTH10038 		0.678 0.797
BBX
M05763_2.00 		Homo sapiens
TGAWCDNYGWTCA
TGAWCRNHGWTCA		 SELEX
Yin et al.(2017)
BBX_eDBD_HT-SELEX 		0.468 0.594
BBX
M05764_2.00 		Homo sapiens
TGAACDNYGTTCA
TGAACRNHGTTCA		 SELEX
Yin et al.(2017)
BBX_eDBD_Methyl-HT-SELEX 		0.468 0.594
ROX1
M00070_2.00 		Saccharomyces cerevisiae
NRAACAATWNN
NNWATTGTTYN		 PBM
Badis et al.(2008)
ROX1_2099 		0.440 0.333
ROX1
M07498_2.00 		Saccharomyces cerevisiae
YYHATTGTTYTS
SARAACAATDRR		 PBM, CSA and or DIP-chip
Mathelier et al.(2014)
MA0371.1 		0.440 0.333
ROX1
M08607_2.00 		Saccharomyces cerevisiae
BYATTGTN
NACAATRV		 Misc
DeBoer et al.(2011)
YPR065W_1396 		0.440 0.333
ROX1
M11346_2.00 		Saccharomyces cerevisiae Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
F$ROX1_Q6_01 		0.440 0.333
ROX1
M11347_2.00 		Saccharomyces cerevisiae Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
F$ROX1_Q6 		0.440 0.333
bbx
M03975_2.00 		Drosophila melanogaster
NAACAATDNCATTGTTN
NAACAATGNHATTGTTN		 SELEX
Nitta et al.(2015)
bbx_1 		0.440 0.536
Bbx
M00196_2.00 		Mus musculus
TTCATTGA
TCAATGAA		 PBM
Badis et al.(2009)
Bbx_3753 		0.434 0.580
For this family, TFs with SR scores > 0.415 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Pvit_02876 Sox 197 265

Links

Other Sox family TFs
Other Pogona vitticeps TFs

477 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
A1O1_00688 Capronia coronata A1O1_00688 N 0.000
A1O7_00797 Cladophialophora yegresii A1O7_00797 N 0.000
AUEXF2481DRAFT_623196 Aureobasidium subglaciale AUEXF2481DRAFT_623196 I 0.000
BAUCODRAFT_384024 Baudoinia compniacensis BAUCODRAFT_384024 I 0.000
BGHDH14_bgh01862 Blumeria graminis BGHDH14_bgh01862 I 0.000
estExt_fgenesh3_pm.C_40367 Neurospora discreta estExt_fgenesh3_pm.C_40367 I 0.000
e_gw1.1.1452.1 Nectria haematococca e_gw1.1.1452.1 I 0.000
e_gw1.17.45.1 Mycosphaerella fijiensis e_gw1.17.45.1 N 0.000
FFUJ_00922 Fusarium fujikuroi FFUJ_00922 I 0.000
FGRRES_00404 Fusarium graminearum FGRRES_00404 I 0.000
FPSE_00066 Fusarium pseudograminearum FPSE_00066 I 0.000
G647_00846 Cladophialophora carrionii G647_00846 N 0.000
GGTG_01235 Gaeumannomyces graminis GGTG_01235 I 0.000
gw1.3.136.1 Mycosphaerella graminicola gw1.3.136.1 N 0.000
HMPREF1120_06272 Exophiala dermatitidis HMPREF1120_06272 N 0.000
M437DRAFT_40207 Aureobasidium melanogenum M437DRAFT_40207 I 0.000
M438DRAFT_263079 Aureobasidium pullulans M438DRAFT_263079 I 0.000
MBM_09947 Marssonina brunnea MBM_09947 I 0.000
MGG_00329 Magnaporthe oryzae MGG_00329 N 0.000
MYCFIDRAFT_135462 Pseudocercospora fijiensis MYCFIDRAFT_135462 N 0.000
Mycgr3G11455 Zymoseptoria tritici Mycgr3G11455 N 0.000
MYCTH_2297073 Myceliophthora thermophila MYCTH_2297073 I 0.000
NCU07374 Neurospora crassa NCU07374 D 0.000
NechaG30594 Fusarium solani NechaG30594 I 0.000
NEUTE1DRAFT_125788 Neurospora tetrasperma NEUTE1DRAFT_125788 I 0.000
OIDMADRAFT_173784 Oidiodendron maius OIDMADRAFT_173784 I 0.000
OIDMADRAFT_173807 Oidiodendron maius OIDMADRAFT_173807 I 0.000
OIDMADRAFT_173839 Oidiodendron maius OIDMADRAFT_173839 I 0.000
OIDMADRAFT_208766 Oidiodendron maius OIDMADRAFT_208766 I 0.000
PODANS_2_150 Podospora anserina PODANS_2_150 I 0.000
PV04_01229 Capronia semiimmersa PV04_01229 N 0.000
S40285_00687 Stachybotrys chlorohalonata S40285_00687 I 0.000
SEPMUDRAFT_150506 Sphaerulina musiva SEPMUDRAFT_150506 N 0.000
SMAC_00325 Sordaria macrospora SMAC_00325 I 0.000
THITE_2112545 Thielavia terrestris THITE_2112545 I 0.000
VDAG_03199 Verticillium dahliae VDAG_03199 N 0.000
Z518_04103 Rhinocladiella mackenziei Z518_04103 N 0.000