cassava18626.valid.m1 (Manihot esculenta)
Sox

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00505 (HMG_box) IPR000910 cassava18626.valid.m1 T333925_2.00 JGI (2012-Mar-17)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
HMG-1
M02720_2.00 		Pisum sativum
STYGTDHTY
RADHACRAS		 SELEX
Mathelier et al.(2014)
MA0044.1 		0.630 0.739
For this family, TFs with SR scores > 0.415 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
cassava18626.valid.m1 Sox 38 107

Links

Other Sox family TFs
Other Manihot esculenta TFs

318 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
estExt_fgenesh1_kg.C_30200002 Phytophthora capsici estExt_fgenesh1_kg.C_30200002 N 0.000
F443_05590 Phytophthora parasitica F443_05590 N 0.000
fgenesh_masked-piw_contig_88-abinit-gene-0.43 Pythium iwayamai fgenesh_masked-piw_contig_88-abinit-gene-0.43 N 0.000
fgenesh_scip_prom.46568.10829 Phytophthora kernoviae fgenesh_scip_prom.46568.10829 N 0.000
HpaG808968 Hyaloperonospora arabidopsidis HpaG808968 N 0.000
maker-pag1_scaffold_161-snap-gene-0.10 Pythium aphanidermatum maker-pag1_scaffold_161-snap-gene-0.10 N 0.000
maker-par_contig_1598-fgenesh-gene-0.1 Pythium arrhenomanes maker-par_contig_1598-fgenesh-gene-0.1 N 0.000
maker-pir_contig_219-fgenesh-gene-0.10 Pythium irregulare maker-pir_contig_219-fgenesh-gene-0.10 N 0.000
maker-pve_contig_855-fgenesh-gene-0.1 Pythium vexans maker-pve_contig_855-fgenesh-gene-0.1 N 0.000
Phyra84742 Phytophthora ramorum Phyra84742 N 0.000
Physo127334 Phytophthora sojae Physo127334 N 0.000
PITG_09816 Phytophthora infestans PITG_09816 N 0.000
PYU1_G001927 Pythium ultimum PYU1_G001927 N 0.000
SPRG_03788 Saprolegnia parasitica SPRG_03788 N 0.000