Cucsa.107270 (Cucumis sativus)
Sox

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00505 (HMG_box) IPR000910 Cucsa.107270 T333951_2.00 JGI (2012-Mar-17)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
HMGB13
M07268_2.00 		Arabidopsis thaliana
HNHYNBNNNHDYCDCCGCCRB
VYGGCGGHGRHDNNNVNRDND		 Dap-seq
OMalley et al.(2016)
3XHMGBOX1_col_a 		0.502 0.722
HMGB13
M07269_2.00 		Arabidopsis thaliana
GGHGGHGGYGGHGGN
NCCDCCRCCDCCDCC		 Dap-seq
OMalley et al.(2016)
3XHMGBOX1_colamp_a 		0.502 0.722
For this family, TFs with SR scores > 0.415 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Cucsa.107270.1 Sox 172 240
Cucsa.107270.1 Sox 288 354
Cucsa.107270.1 Sox 416 484
Cucsa.107270.2 Sox 172 240
Cucsa.107270.2 Sox 288 354
Cucsa.107270.2 Sox 416 456

Links

Other Sox family TFs
Other Cucumis sativus TFs

48 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
A1O1_01225 Capronia coronata A1O1_01225 I
A1O3_08807 Capronia epimyces A1O3_08807 I
A1O5_06113 Cladophialophora psammophila A1O5_06113 I
A1O7_01699 Cladophialophora yegresii A1O7_01699 I
A1O9_00139 Exophiala aquamarina A1O9_00139 I
AB07871.1 Alternaria brassicicola AB07871.1 I
BDDG_05536 Blastomyces dermatitidis BDDG_05536 I
ACLA_048970 Aspergillus clavatus CADACLAG00004962 I
CADAFLAG00001948 Aspergillus flavus CADAFLAG00001948 I
CADAFLAG00004078 Aspergillus flavus CADAFLAG00004078 I
AFUA_4G09710 Aspergillus fumigatus CADAFUAG00008093 I
ANIA_01848 Aspergillus nidulans CADANIAG00008499 D
CADAORAG00001789 Aspergillus oryzae CADAORAG00001789 I
CADAORAG00006466 Aspergillus oryzae CADAORAG00006466 I
ATEG_03734 Aspergillus terreus CADATEAG00005983 I
ATEG_00770 Aspergillus terreus CADATEAG00007541 I
NFIA_106320 Neosartorya fischeri CADNFIAG00009607 I
CIMG_07923 Coccidioides immitis CIMG_07923 I
COCC4DRAFT_71571 Bipolaris maydis COCC4DRAFT_71571 I
COCCADRAFT_2138 Bipolaris zeicola COCCADRAFT_2138 I
COCMIDRAFT_101771 Bipolaris oryzae COCMIDRAFT_101771 I
COCSADRAFT_95191 Bipolaris sorokiniana COCSADRAFT_95191 I
COCVIDRAFT_33542 Bipolaris victoriae COCVIDRAFT_33542 I
CPC735_019860 Coccidioides posadasii CPC735_019860 I
EPUS_03517 Endocarpon pusillum EPUS_03517 I
estExt_Genewise1.C_140356 Cochliobolus heterostrophus C5 estExt_Genewise1.C_140356 I
EURHEDRAFT_407958 Aspergillus ruber EURHEDRAFT_407958 I
e_gw1.00609.122.1 Aspergillus carbonarius e_gw1.00609.122.1 I
G647_10121 Cladophialophora carrionii G647_10121 I
GSTUM_00007307001 Tuber melanosporum GSTUM_00007307001 N
H101_05391 Trichophyton interdigitale H101_05391 I
H102_03533 Trichophyton rubrum H102_03533 I
H105_03557 Trichophyton soudanense H105_03557 I
HCBG_08145 Histoplasma capsulatum HCBG_08145 I
HMPREF1120_00298 Exophiala dermatitidis HMPREF1120_00298 I
HMPREF1541_06468 Cyphellophora europaea HMPREF1541_06468 I
JAAARDRAFT_47740 Jaapia argillacea JAAARDRAFT_47740 N
LEMA_P064820.1 Leptosphaeria maculans LEMA_P064820.1 I
MCYG_02108 Microsporum canis MCYG_02108 I
MCYG_02108 Arthroderma otae MCYG_02108 I
MGYG_03046 Microsporum gypseum MGYG_03046 I
PAAG_06446 Paracoccidioides sp lutzii PAAG_06446 I
PABG_02841 Paracoccidioides brasiliensis PABG_02841 I
PDE_05453 Penicillium oxalicum PDE_05453 I
PDIP_71760 Penicillium digitatum PDIP_71760 I
PEX1_043550 Penicillium expansum PEX1_043550 I
PITC_025970 Penicillium italicum PITC_025970 I
PMAA_056220 Penicillium marneffei PMAA_056220 I
PMAA_056220 Talaromyces marneffei PMAA_056220 I
PTRG_02861 Pyrenophora triticirepentis PTRG_02861 I
PTT_14613 Pyrenophora teres PTT_14613 I
PV04_00230 Capronia semiimmersa PV04_00230 I
PV05_09886 Exophiala xenobiotica PV05_09886 I
PV06_05595 Exophiala oligosperma PV06_05595 I
PV07_09358 Cladophialophora immunda PV07_09358 I
PV08_01386 Exophiala spinifera PV08_01386 I
PV09_07171 Verruconis gallopava PV09_07171 I
PV10_01961 Exophiala mesophila PV10_01961 I
PV11_09346 Exophiala sideris PV11_09346 I
PVAR5_2620 Byssochlamys spectabilis PVAR5_2620 I
SETTUDRAFT_166291 Setosphaeria turcica SETTUDRAFT_166291 I
SNOG_03490 Stagonospora nodorum SNOG_03490 I
TEQG_01149 Trichophyton equinum TEQG_01149 I
TESG_07954 Trichophyton tonsurans TESG_07954 I
TRV_02966 Trichophyton verrucosum TRV_02966 I
U727_00430522121 Penicillium solitum U727_00430522121 N
UREG_02223 Uncinocarpus reesii UREG_02223 I
W97_04157 Coniosporium apollinis W97_04157 I
Z517_02285 Fonsecaea pedrosoi Z517_02285 I
Z518_04968 Rhinocladiella mackenziei Z518_04968 I
Z519_04625 Cladophialophora bantiana Z519_04625 I