Carubv10000930m.g (Capsella rubella)
Sox

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00505 (HMG_box) IPR000910 Carubv10000930m.g T334412_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
HMGB13
M07268_2.00 		Arabidopsis thaliana
HNHYNBNNNHDYCDCCGCCRB
VYGGCGGHGRHDNNNVNRDND		 Dap-seq
OMalley et al.(2016)
3XHMGBOX1_col_a 		0.671 0.878
HMGB13
M07269_2.00 		Arabidopsis thaliana
GGHGGHGGYGGHGGN
NCCDCCRCCDCCDCC		 Dap-seq
OMalley et al.(2016)
3XHMGBOX1_colamp_a 		0.671 0.878
For this family, TFs with SR scores > 0.415 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Carubv10000930m Sox 139 207
Carubv10000930m Sox 256 322
Carubv10000930m Sox 382 450

Links

Other Sox family TFs
Other Capsella rubella TFs

53 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Aan_R009109 Calypte anna Aan_R009109 I 0.000
Afo_R006000 Aptenodytes forsteri Afo_R006000 I 0.000
Brh_R010409 Buceros rhinoceros Brh_R010409 I 0.000
Cmyd_10020724 Chelonia mydas Cmyd_10020724 I 0.000
THAP12 Anolis carolinensis ENSACAG00000017074 I 0.000
ENSAMEG00000016926 Ailuropoda melanoleuca ENSAMEG00000016926 I 0.000
ENSAMXG00000002922 Astyanax mexicanus ENSAMXG00000002922 I 0.000
ENSAPLG00000010379 Anas platyrhynchos ENSAPLG00000010379 I 0.000
THAP12 Bos taurus ENSBTAG00000031609 I 0.000
THAP12 Canis familiaris ENSCAFG00000005274 I 0.000
ENSCHOG00000005539 Choloepus hoffmanni ENSCHOG00000005539 I 0.000
ENSCHOG00000007628 Choloepus hoffmanni ENSCHOG00000007628 I 0.000
ENSCHOG00000009417 Choloepus hoffmanni ENSCHOG00000009417 I 0.000
ENSCJAG00000012300 Callithrix jacchus ENSCJAG00000012300 I 0.000
THAP12 Cavia porcellus ENSCPOG00000013167 I 0.000
ENSCSAG00000003894 Chlorocebus sabaeus ENSCSAG00000003894 I 0.000
prkrirb Danio rerio ENSDARG00000020964 D 0.000
ENSDNOG00000031781 Dasypus novemcinctus ENSDNOG00000031781 I 0.000
ENSDORG00000007522 Dipodomys ordii ENSDORG00000007522 I 0.000
THAP12 Erinaceus europaeus ENSEEUG00000003060 I 0.000
THAP12 Homo sapiens ENSG00000137492 D 0.000
THAP12 Gallus gallus ENSGALG00000000838 D 0.000
ENSGGOG00000006152 Gorilla gorilla ENSGGOG00000006152 I 0.000
ENSGGOG00000023767 Gorilla gorilla ENSGGOG00000023767 I 0.000
THAP12 Gorilla gorilla ENSGGOG00000024317 I 0.000
ENSGMOG00000010245 Gadus morhua ENSGMOG00000010245 I 0.000
ENSLACG00000001033 Latimeria chalumnae ENSLACG00000001033 I 0.000
THAP12 Loxodonta africana ENSLAFG00000011743 I 0.000
ENSLOCG00000004788 Lepisosteus oculatus ENSLOCG00000004788 I 0.000
ENSMEUG00000011765 Macropus eugenii ENSMEUG00000011765 I 0.000
THAP12 Meleagris gallopavo ENSMGAG00000015267 I 0.000
ENSMLUG00000001341 Myotis lucifugus ENSMLUG00000001341 I 0.000
ENSMMUG00000013164 Macaca mulatta ENSMMUG00000013164 I 0.000
ENSMMUG00000022399 Macaca mulatta ENSMMUG00000022399 I 0.000
ENSMMUP00000040972 Macaca fascicularis ENSMMUP00000040972 I 0.000
THAP12 Monodelphis domestica ENSMODG00000005315 I 0.000
Thap12 Mus musculus ENSMUSG00000030753 I 0.000
ENSNLEG00000005175 Nomascus leucogenys ENSNLEG00000005175 I 0.000
THAP12 Ornithorhynchus anatinus ENSOANG00000000831 I 0.000
ENSOARG00000012702 Ovis aries ENSOARG00000012702 I 0.000
ENSOCUG00000009178 Oryctolagus cuniculus ENSOCUG00000009178 I 0.000
ENSOCUG00000017323 Oryctolagus cuniculus ENSOCUG00000017323 I 0.000
ENSOCUG00000021566 Oryctolagus cuniculus ENSOCUG00000021566 I 0.000
THAP12 Otolemur garnettii ENSOGAG00000001569 I 0.000
ENSONIG00000011168 Oreochromis niloticus ENSONIG00000011168 I 0.000
prkrirb Oryzias latipes ENSORLG00000005427 D 0.000
ENSP00000260045 Macaca fascicularis ENSP00000260045 I 0.000
ENSP00000260045-D1 Bos grunniens ENSP00000260045-D1 I 0.000
ENSPANG00000003101 Papio anubis ENSPANG00000003101 I 0.000
ENSPCAG00000008407 Procavia capensis ENSPCAG00000008407 I 0.000
ENSPFOG00000009414 Poecilia formosa ENSPFOG00000009414 I 0.000
ENSPPYG00000003697 Pongo abelii ENSPPYG00000003697 I 0.000
THAP12 Pan troglodytes ENSPTRG00000004091 I 0.000
ENSPVAG00000011935 Pteropus vampyrus ENSPVAG00000011935 I 0.000
Thap12 Rattus norvegicus ENSRNOG00000053923 I 0.000
THAP12 Taeniopygia guttata ENSTGUG00000013565 I 0.000
prkrirb Tetraodon nigroviridis ENSTNIG00000003292 D 0.000
prkrirb Takifugu rubripes ENSTRUG00000007070 I 0.000
ENSTSYG00000000689 Tarsius syrichta ENSTSYG00000000689 I 0.000
THAP12 Tursiops truncatus ENSTTRG00000013287 I 0.000
ENSXMAG00000001706 Xiphophorus maculatus ENSXMAG00000001706 I 0.000
Gfo_R003337 Geospiza fortis Gfo_R003337 I 0.000
Pvit_02386 Pogona vitticeps Pvit_02386 I 0.000
Tal_R010930 Tyto alba Tal_R010930 I 0.000
thap12 Xenopus tropicalis XB-GENE-6073216 I 0.000