gene32050-v1.0-hybrid (Fragaria vesca)
Sox

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00505 (HMG_box) IPR000910 gene32050-v1.0-hybrid T334524_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
HMGB13
M07268_2.00 		Arabidopsis thaliana
HNHYNBNNNHDYCDCCGCCRB
VYGGCGGHGRHDNNNVNRDND		 Dap-seq
OMalley et al.(2016)
3XHMGBOX1_col_a 		0.513 0.668
HMGB13
M07269_2.00 		Arabidopsis thaliana
GGHGGHGGYGGHGGN
NCCDCCRCCDCCDCC		 Dap-seq
OMalley et al.(2016)
3XHMGBOX1_colamp_a 		0.513 0.668
For this family, TFs with SR scores > 0.415 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
mrna32050.1-v1.0-hybrid Sox 176 244
mrna32050.1-v1.0-hybrid Sox 292 359
mrna32050.1-v1.0-hybrid Sox 420 488

Links

Other Sox family TFs
Other Fragaria vesca TFs

49 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
10073_YHR084W Saccharomyces paradoxus 10073_YHR084W I 0.000
10586_YHR084W Saccharomyces bayanus 10586_YHR084W I 0.000
9948_YHR084W Saccharomyces mikatae 9948_YHR084W I 0.000
AACERI_AaceriADR304W Saccharomycetaceae sp ashbya aceri AACERI_AaceriADR304W I 0.000
AGOS_ADR304W Ashbya gossypii AGOS_ADR304W I 0.000
AWRI1499_4487 Brettanomyces bruxellensis AWRI1499_4487 I 0.000
BN7_3628 Wickerhamomyces ciferrii BN7_3628 I 0.000
CAGL0M01254g Candida glabrata CAGL0M01254g I 0.000
CANTEDRAFT_127609 Candida tenuis CANTEDRAFT_127609 I 0.000
CaO19.11911 Candida albicans CaO19.11911 I 0.000
CaO19.4433 Candida albicans CaO19.4433 I 0.000
CD36_06880 Candida dubliniensis CD36_06880 I 0.000
CLUG_02576 Candida lusitaniae CLUG_02576 I 0.000
CLUG_02576 Clavispora lusitaniae CLUG_02576 I 0.000
CORT_0A07880 Candida orthopsilosis CORT_0A07880 I 0.000
CPAG_01041 Candida parapsilosis CPAG_01041 I 0.000
CTRG_04159 Candida tropicalis CTRG_04159 I 0.000
DEHA2F25894g Debaryomyces hansenii DEHA2F25894g I 0.000
Ecym_8007 Eremothecium cymbalariae Ecym_8007 I 0.000
estExt_gwp_genewisePlus_worm.C_chr_6.10823 Pichia stipitis estExt_gwp_genewisePlus_worm.C_chr_6.10823 I 0.000
GNLVRS01_PISO0M06744g Millerozyma farinosa GNLVRS01_PISO0M06744g I 0.000
GNLVRS01_PISO0N06877g Millerozyma farinosa GNLVRS01_PISO0N06877g I 0.000
HPODL_03704 Ogataea parapolymorpha HPODL_03704 I 0.000
JL09_g48 Pichia kudriavzevii JL09_g48 N 0.000
KAFR_0D04350 Kazachstania africana KAFR_0D04350 I 0.000
KAFR_0D04820 Kazachstania africana KAFR_0D04820 I 0.000
KLLA0_E17139g Kluyveromyces lactis KLLA0_E17139g I 0.000
KLTH0E03586g Lachancea thermotolerans KLTH0E03586g I 0.000
KLTH0E03586g Kluyveromyces thermotolerans KLTH0E03586g I 0.000
KNAG_0B04450 Kazachstania naganishii KNAG_0B04450 I 0.000
KNAG_0C05340 Kazachstania naganishii KNAG_0C05340 I 0.000
Kpol_1055p10 Vanderwaltozyma polyspora Kpol_1055p10 I 0.000
KUCA_T00000816001 Kuraishia capsulata KUCA_T00000816001 I 0.000
Kwal_20171 Kluyveromyces waltii Kwal_20171 I 0.000
LALA0_S05e03730g Lachancea lanzarotensis LALA0_S05e03730g I 0.000
LELG_00842 Lodderomyces elongisporus LELG_00842 I 0.000
NCAS_0F03020 Naumovozyma castellii NCAS_0F03020 I 0.000
NCAS_0H01800 Naumovozyma castellii NCAS_0H01800 I 0.000
NDAI_0C04470 Naumovozyma dairenensis NDAI_0C04470 I 0.000
PGUG_03108 Candida guilliermondii PGUG_03108 I 0.000
PGUG_03108 Meyerozyma guilliermondii PGUG_03108 I 0.000
PICST_84653 Scheffersomyces stipitis PICST_84653 I 0.000
SAKL0G08184g Lachancea kluyveri SAKL0G08184g I 0.000
Scas_Contig646.6 Saccharomyces castellii Scas_Contig646.6 I 0.000
SPAPADRAFT_130733 Spathaspora passalidarum SPAPADRAFT_130733 I 0.000
SU7_1463 Saccharomyces arboricola SU7_1463 I 0.000
TBLA_0A03270 Tetrapisispora blattae TBLA_0A03270 I 0.000
TDEL_0E02480 Torulaspora delbrueckii TDEL_0E02480 I 0.000
TPHA_0D02230 Tetrapisispora phaffii TPHA_0D02230 I 0.000
XP_002493672.1 Pichia pastoris XP_002493672.1 I 0.000
YALI0_E16236g Yarrowia lipolytica YALI0_E16236g N 0.000
STE12 Saccharomyces cerevisiae YHR084W D 0.000
ZBAI_01972 Zygosaccharomyces bailii ZBAI_01972 I 0.000
ZBAI_06743 Zygosaccharomyces bailii ZBAI_06743 I 0.000