SapurV1A.0072s0330 (Salix purpurea)
Sox

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00505 (HMG_box) IPR000910 SapurV1A.0072s0330 T334697_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
CRC
M07266_2.00 		Arabidopsis thaliana
TWATCATW
WATGATWA		 Dap-seq
OMalley et al.(2016)
CRC_col_a 		0.700 0.822
CRC
M07267_2.00 		Arabidopsis thaliana
GGTTAGTGTTTTGGAGTCGAATATGACTTG
CAAGTCATATTCGACTCCAAAACACTAACC		 Dap-seq
OMalley et al.(2016)
CRC_colamp_a 		0.700 0.822
YAB1
M00890_2.00 		Arabidopsis thaliana
AATAATWA
TWATTATT		 PBM
Franco-Zorrilla et al.(2014)
YAB1 		0.683 0.689
YAB5
M02486_2.00 		Arabidopsis thaliana
NNNNHRN
NYDNNNN		 PBM
Weirauch et al.(2014)
pTH7575 		0.653 0.689
YAB5
M00889_2.00 		Arabidopsis thaliana
NATRATTADNNN
NNNHTAATYATN		 PBM
Franco-Zorrilla et al.(2014)
YAB5 		0.653 0.689
INO
M02485_2.00 		Arabidopsis thaliana
NHNNNYRNNN
NNNYRNNNDN		 PBM
Weirauch et al.(2014)
pTH7516 		0.582 0.600
For this family, TFs with SR scores > 0.415 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
SapurV1A.0072s0330.1.p Sox 127 171
SapurV1A.0072s0330.2.p Sox 127 171
SapurV1A.0072s0330.3.p Sox 88 132

Links

Other Sox family TFs
Other Salix purpurea TFs

506 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
A1O1_01641 Capronia coronata A1O1_01641 N
BAUCODRAFT_124636 Baudoinia compniacensis BAUCODRAFT_124636 N
CH063_13742 Colletotrichum higginsianum CH063_13742 N
Cob_02891 Colletotrichum orbiculare Cob_02891 N
COCC4DRAFT_129663 Bipolaris maydis COCC4DRAFT_129663 N
COCCADRAFT_105831 Bipolaris zeicola COCCADRAFT_105831 N
COCMIDRAFT_24636 Bipolaris oryzae COCMIDRAFT_24636 N
COCSADRAFT_279537 Bipolaris sorokiniana COCSADRAFT_279537 N
COCVIDRAFT_109603 Bipolaris victoriae COCVIDRAFT_109603 N
CSUB01_02264 Colletotrichum sublineola CSUB01_02264 N
FFUJ_09190 Fusarium fujikuroi FFUJ_09190 N
FOXG_11774 Fusarium oxysporum FOXG_11774 N
SETTUDRAFT_23115 Setosphaeria turcica SETTUDRAFT_23115 N