Thhalv10025168m.g (Eutrema salsugineum)
Sox

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00505 (HMG_box) IPR000910 Thhalv10025168m.g T334739_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
HMGB13
M07268_2.00 		Arabidopsis thaliana
HNHYNBNNNHDYCDCCGCCRB
VYGGCGGHGRHDNNNVNRDND		 Dap-seq
OMalley et al.(2016)
3XHMGBOX1_col_a 		0.552 0.761
HMGB13
M07269_2.00 		Arabidopsis thaliana
GGHGGHGGYGGHGGN
NCCDCCRCCDCCDCC		 Dap-seq
OMalley et al.(2016)
3XHMGBOX1_colamp_a 		0.552 0.761
For this family, TFs with SR scores > 0.415 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Thhalv10025168m Sox 137 205
Thhalv10025168m Sox 254 320
Thhalv10025168m Sox 378 446

Links

Other Sox family TFs
Other Eutrema salsugineum TFs

44 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
AC233853.1_FG002 Zea mays AC233853.1_FG002 N 0.000
Aquca_005_00119 Aquilegia coerulea Aquca_005_00119 N 0.000
BGIOSGA004481 Oryza indica BGIOSGA004481 N 0.000
BGIOSGA007886 Oryza indica BGIOSGA007886 N 0.000
BRADI2G06790 Brachypodium distachyon BRADI2G06790 N 0.000
BRADI3G09340 Brachypodium distachyon BRADI3G09340 N 0.000
cassava21652.m1 Manihot esculenta cassava21652.m1 N 0.000
Ca_12857 Cicer arietinum Ca_12857 N 0.000
Ciclev10008720m.g Citrus clementina Ciclev10008720m.g N 0.000
Cla023708 Citrullus lanatus Cla023708 N 0.000
Cucsa.122790 Cucumis sativus Cucsa.122790 N 0.000
evm.TU.supercontig_131.79 Carica papaya evm.TU.supercontig_131.79 N 0.000
F775_31528 Aegilops tauschii F775_31528 N 0.000
gene27194-v1.0-hybrid Fragaria vesca gene27194-v1.0-hybrid N 0.000
GLYMA13G34770 Glycine max GLYMA13G34770 N 0.000
Gorai.002G064900 Gossypium raimondii Gorai.002G064900 N 0.000
Gorai.013G172500 Gossypium raimondii Gorai.013G172500 N 0.000
GRMZM2G027976 Zea mays GRMZM2G027976 N 0.000
GRMZM2G052102 Zea mays GRMZM2G052102 N 0.000
GRMZM2G158313 Zea mays GRMZM2G158313 N 0.000
GSMUA_Achr6G26930_001 Musa acuminata GSMUA_Achr6G26930_001 N 0.000
GSMUA_Achr9G06540_001 Musa acuminata GSMUA_Achr9G06540_001 N 0.000
LPERR01G06720 Leersia perrieri LPERR01G06720 N 0.000
MDP0000133698 Malus domestica MDP0000133698 N 0.000
mgf003967m Mimulus guttatus mgf003967m N 0.000
MLOC_39203 Hordeum vulgare MLOC_39203 N 0.000
MLOC_66252 Hordeum vulgare MLOC_66252 N 0.000
MLOC_72368 Hordeum vulgare MLOC_72368 N 0.000
OB01G17130 Oryza brachyantha OB01G17130 N 0.000
OBART01G07120 Oryza barthii OBART01G07120 N 0.000
OBART01G31310 Oryza barthii OBART01G31310 N 0.000
OBART02G10550 Oryza barthii OBART02G10550 N 0.000
OGLUM01G08020 Oryza glumaepatula OGLUM01G08020 N 0.000
OGLUM01G35480 Oryza glumaepatula OGLUM01G35480 N 0.000
OGLUM02G10470 Oryza glumaepatula OGLUM02G10470 N 0.000
OLONG_003093 Oryza longistaminata OLONG_003093 N 0.000
OMERI01G28450 Oryza meridionalis OMERI01G28450 N 0.000
OMERI02G11410 Oryza meridionalis OMERI02G11410 N 0.000
ONIVA01G09160 Oryza nivara ONIVA01G09160 N 0.000
ONIVA01G35770 Oryza nivara ONIVA01G35770 N 0.000
ONIVA02G11660 Oryza nivara ONIVA02G11660 N 0.000
OPUNC01G06850 Oryza punctata OPUNC01G06850 N 0.000
OPUNC01G30390 Oryza punctata OPUNC01G30390 N 0.000
OPUNC02G09400 Oryza punctata OPUNC02G09400 N 0.000
orange1.1g037696m.g Citrus sinensis orange1.1g037696m.g N 0.000
ORGLA01G0254900 Oryza glaberrima ORGLA01G0254900 N 0.000
ORGLA02G0094900 Oryza glaberrima ORGLA02G0094900 N 0.000
ORUFI01G07680 Oryza rufipogon ORUFI01G07680 N 0.000
ORUFI01G34500 Oryza rufipogon ORUFI01G34500 N 0.000
ORUFI02G10470 Oryza rufipogon ORUFI02G10470 N 0.000
BZIP02 Oryza sativa OS01G0211800 N 0.000
BZIP06 Oryza sativa OS01G0756200 N 0.000
Pavir.Aa02794 Panicum virgatum Pavir.Aa02794 N 0.000
Pavir.Ab01112 Panicum virgatum Pavir.Ab01112 N 0.000
Pavir.Ea02752 Panicum virgatum Pavir.Ea02752 N 0.000
Pavir.Eb03400 Panicum virgatum Pavir.Eb03400 N 0.000
Pavir.J05339 Panicum virgatum Pavir.J05339 N 0.000
Pavir.J11397 Panicum virgatum Pavir.J11397 N 0.000
PGSC0003DMG400012436 Solanum tuberosum PGSC0003DMG400012436 N 0.000
PK16223.1 Cannabis sativa PK16223.1 N 0.000
PRUPE_ppa022385mg Prunus persica PRUPE_ppa022385mg N 0.000
SapurV1A.0083s0430 Salix purpurea SapurV1A.0083s0430 N 0.000
Sb03g002050 Sorghum bicolor Sb03g002050 N 0.000
Sb03g034950 Sorghum bicolor Sb03g034950 N 0.000
Si002311m.g Setaria italica Si002311m.g N 0.000
Si018161m.g Setaria italica Si018161m.g N 0.000
Solyc07g062710.2 Solanum lycopersicum Solyc07g062710.2 N 0.000
TCM_031686 Theobroma cacao TCM_031686 N 0.000
TRAES3BF093300030CFD_g Triticum aestivum TRAES3BF093300030CFD_g N 0.000
TRAES3BF117100130CFD_g Triticum aestivum TRAES3BF117100130CFD_g N 0.000
Traes_2BS_C9A338257 Triticum aestivum Traes_2BS_C9A338257 N 0.000
Traes_5BL_573ABF1D7 Triticum aestivum Traes_5BL_573ABF1D7 N 0.000
Traes_5DL_D30ADBFDE Triticum aestivum Traes_5DL_D30ADBFDE N 0.000
VIT_19s0014g01780 Vitis vinifera VIT_19s0014g01780 N 0.000