CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Scas_Contig717.15
(
Saccharomyces castellii
)
Sox
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00505 (HMG_box)
IPR000910
Scas_Contig717.15
T334964_2.00
Misc (2018-Jan-19)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No TFs with similar DNA binding domains
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Scas_Contig717.15
Sox
47
115
VKRPMSAYLFYYQANREKLAEANPNIHMKDIAKLASEKWNTLSNQEKLPFERKSSEQMEQYHKQMNAIE
Scas_Contig717.15
Sox
120
186
PKKPLPAFLAFSKEVRPTIVEQDPSLTFAEISSIIGEKWRDLDPAVKDEYIEDYKLRLQDWQKQTSH
Links
Other
Sox
family TFs
Other
Saccharomyces castellii
TFs
3 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
KAFR_0A01880
Kazachstania africana
KAFR_0A01880
N
0.420
NCAS_0F00880
Naumovozyma castellii
NCAS_0F00880
N
0.741
NDAI_0H01380
Naumovozyma dairenensis
NDAI_0H01380
N
0.470