HmN_000448500 (Hymenolepis microstoma)
Sox

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00505 (HMG_box) IPR000910 HmN_000448500 T336432_2.00 WormBase:ParaSite (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Tcf7
M00193_2.00 		Mus musculus
HNHNNNNNN
NNNNNNDND		 PBM
Badis et al.(2009)
Tcf7_0950 		0.643 0.768
Tcf7l2
M00198_2.00 		Mus musculus
NSWTCAAAVN
NBTTTGAWSN		 PBM
Badis et al.(2009)
Tcf7l2_3461 		0.643 0.768
Lef1
M00200_2.00 		Mus musculus
NSWTCAAAVN
NBTTTGAWSN		 PBM
Badis et al.(2009)
Lef1_3504 		0.643 0.768
LEF1
M03511_2.00 		Homo sapiens
NRAGATCAAAGRVWW
WWBYCTTTGATCTYN		 SELEX
Jolma et al.(2013)
LEF1_1 		0.643 0.768
Tcf7
M03532_2.00 		Mus musculus
AAASATCAAAGV
BCTTTGATSTTT		 SELEX
Jolma et al.(2013)
Tcf7_1 		0.643 0.768
LEF1
M05771_2.00 		Homo sapiens
NSATCAAAS
STTTGATSN		 SELEX
Yin et al.(2017)
LEF1_eDBD_HT-SELEX_1 		0.643 0.768
LEF1
M05772_2.00 		Homo sapiens
WCATCGRGRCGCTGW
WCAGCGYCYCGATGW		 SELEX
Yin et al.(2017)
LEF1_eDBD_HT-SELEX_2 		0.643 0.768
LEF1
M05775_2.00 		Homo sapiens
ASATCAAAG
CTTTGATST		 SELEX
Yin et al.(2017)
LEF1_FL_HT-SELEX_1 		0.643 0.768
LEF1
M05776_2.00 		Homo sapiens
ACATCGRGRCGCTGW
WCAGCGYCYCGATGT		 SELEX
Yin et al.(2017)
LEF1_FL_HT-SELEX_2 		0.643 0.768
TCF7
M05755_2.00 		Homo sapiens
DSATCAAWS
SWTTGATSH		 SELEX
Yin et al.(2017)
TCF7_eDBD_HT-SELEX_1 		0.643 0.768
TCF7
M05756_2.00 		Homo sapiens
WCWKCGYCYCGWTGW
WCAWCGRGRCGMWGW		 SELEX
Yin et al.(2017)
TCF7_eDBD_HT-SELEX_2 		0.643 0.768
LEF1
M05895_2.00 		Homo sapiens
WTCAAAGNNN
NNNCTTTGAW		 SMiLE-seq
Isakova et al.(2017)
LEF1 		0.643 0.768
TCF7
M05890_2.00 		Homo sapiens
NNASATCAAASNN
NNSTTTGATSTNN		 SMiLE-seq
Isakova et al.(2017)
TCF7 		0.643 0.768
pan
M06451_2.00 		Drosophila melanogaster
DWYCAAAD
HTTTGRWH		 B1H
Zhu et al.(2011)
pan_FlyReg_FBgn0085432 		0.643 0.768
Tcf7l2
M02646_2.00 		Mus musculus
SATCAAAGN
NCTTTGATS		 SELEX
Hallikas et al.(2006)
Tcf4 		0.643 0.768
TCF7L2
M08167_2.00 		Homo sapiens
NVASWTCAAAGVVN
NBBCTTTGAWSTBN		 ChIP-seq
Mathelier et al.(2014)
MA0523.1 		0.643 0.768
pan
M08428_2.00 		Drosophila melanogaster
WHNAAAVRNRSCGM
KCGSYNYBTTTNDW		 ChIP-chip
Mathelier et al.(2014)
MA0237.2 		0.643 0.768
TCF7L2
M09393_2.00 		Homo sapiens
DGCAGSTGKS
SMCASCTGCH		 Misc
Kulakovskiy et al.(2013)
ITF2_HUMAN.H11MO.0.C 		0.643 0.768
LEF1
M09392_2.00 		Homo sapiens
BSYTTTSWNNTBYH
DRVANNWSAAARSV		 Misc
Kulakovskiy et al.(2013)
LEF1_HUMAN.H11MO.0.A 		0.643 0.768
TCF7
M09386_2.00 		Homo sapiens
NBBCTTTSAWSTBNBN
NVNVASWTSAAAGVVN		 Misc
Kulakovskiy et al.(2013)
TCF7_HUMAN.H11MO.0.A 		0.643 0.768
TCF7L2
M09394_2.00 		Homo sapiens
VVASWTCAAAGVV
BBCTTTGAWSTBB		 Misc
Kulakovskiy et al.(2013)
TF7L2_HUMAN.H11MO.0.A 		0.643 0.768
Lef1
M09402_2.00 		Mus musculus
BSYTTTSWNNTBYH
DRVANNWSAAARSV		 Misc
Kulakovskiy et al.(2013)
LEF1_MOUSE.H11MO.0.B 		0.643 0.768
Tcf7
M09400_2.00 		Mus musculus
VVRVADSAAARVVVNV
BNBBBYTTTSHTBYBB		 Misc
Kulakovskiy et al.(2013)
TCF7_MOUSE.H11MO.0.A 		0.643 0.768
Tcf7l2
M09401_2.00 		Mus musculus
VVASWTCAAAGVV
BBCTTTGAWSTBB		 Misc
Kulakovskiy et al.(2013)
TF7L2_MOUSE.H11MO.0.A 		0.643 0.768
TCF7L2
M09638_2.00 		Homo sapiens
CCTTTGAWST
ASWTCAAAGG		 Misc
Heinz et al.(2010)
K562-TCF7L2_GSE29196 		0.643 0.768
pan
M11337_2.00 		Drosophila melanogaster
AAGATCAAAGG
CCTTTGATCTT		 Transfac
Matys et al.(2006)
I$TCF_1 		0.643 0.768
pan
M11338_2.00 		Drosophila melanogaster Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
I$TCF_Q6 		0.643 0.768
LEF1
M11311_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$LEF1_Q2_01 		0.643 0.768
LEF1
M11312_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$LEF1_Q3 		0.643 0.768
LEF1
M11313_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$LEF1_Q4 		0.643 0.768
LEF1
M11314_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$LEF1_Q5_01 		0.643 0.768
LEF1
M11315_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$LEF1_Q5 		0.643 0.768
TCF7
M11294_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$TCF1_Q5_01 		0.643 0.768
TCF7
M11295_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$TCF1_Q5 		0.643 0.768
TCF7L2
M11316_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$TCF4_Q5_01 		0.643 0.768
TCF7L2
M11317_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$TCF4_Q5_02 		0.643 0.768
TCF7L2
M11318_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$TCF4_Q5 		0.643 0.768
TCF7L2
M11319_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$TCF7L2_06 		0.643 0.768
LEF1
M05773_2.00 		Homo sapiens
ASATCAAAG
CTTTGATST		 SELEX
Yin et al.(2017)
LEF1_eDBD_Methyl-HT-SELEX_1 		0.643 0.768
LEF1
M05774_2.00 		Homo sapiens
WCATCGRGGCGCTGW
WCAGCGCCYCGATGW		 SELEX
Yin et al.(2017)
LEF1_eDBD_Methyl-HT-SELEX_2 		0.643 0.768
LEF1
M05777_2.00 		Homo sapiens
ASATCAAAG
CTTTGATST		 SELEX
Yin et al.(2017)
LEF1_FL_Methyl-HT-SELEX_1 		0.643 0.768
LEF1
M05778_2.00 		Homo sapiens
ACATCGRGRCGCTGW
WCAGCGYCYCGATGT		 SELEX
Yin et al.(2017)
LEF1_FL_Methyl-HT-SELEX_2 		0.643 0.768
TCF7
M05757_2.00 		Homo sapiens
RSATCAAAS
STTTGATSY		 SELEX
Yin et al.(2017)
TCF7_eDBD_Methyl-HT-SELEX_1 		0.643 0.768
TCF7
M05758_2.00 		Homo sapiens
WCAWCGRGRCGMWGW
WCWKCGYCYCGWTGW		 SELEX
Yin et al.(2017)
TCF7_eDBD_Methyl-HT-SELEX_2 		0.643 0.768
Tcf7l1
M00207_2.00 		Mus musculus
NNNNWWDN
NHWWNNNN		 PBM
Badis et al.(2009)
Tcf3_3787 		0.643 0.754
TCF7L1
M03512_2.00 		Homo sapiens
AAAGATCAAAGG
CCTTTGATCTTT		 SELEX
Jolma et al.(2013)
TCF7L1_1 		0.643 0.754
TCF7L1
M05779_2.00 		Homo sapiens
RSATCAAAG
CTTTGATSY		 SELEX
Yin et al.(2017)
TCF7L1_eDBD_HT-SELEX_1 		0.643 0.754
TCF7L1
M05780_2.00 		Homo sapiens
ACATCGRGRCGCTGW
WCAGCGYCYCGATGT		 SELEX
Yin et al.(2017)
TCF7L1_eDBD_HT-SELEX_2 		0.643 0.754
TCF7L1
M09395_2.00 		Homo sapiens
NBBCTTTGAWSTB
VASWTCAAAGVVN		 Misc
Kulakovskiy et al.(2013)
TF7L1_HUMAN.H11MO.0.B 		0.643 0.754
Tcf7l1
M09406_2.00 		Mus musculus
BBCTTTGAWST
ASWTCAAAGVV		 Misc
Kulakovskiy et al.(2013)
TF7L1_MOUSE.H11MO.0.A 		0.643 0.754
Tcf7l1
M09407_2.00 		Mus musculus
NDGCAGSTGBB
VVCASCTGCHN		 Misc
Kulakovskiy et al.(2013)
TFE2_MOUSE.H11MO.0.A 		0.643 0.754
TCF7L1
M11320_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$TCF3_01 		0.643 0.754
TCF7L1
M11321_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$TCF3_Q6_01 		0.643 0.754
TCF7L1
M11322_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$TCF3_Q6 		0.643 0.754
TCF7L1
M05781_2.00 		Homo sapiens
CTTTGATSY
RSATCAAAG		 SELEX
Yin et al.(2017)
TCF7L1_eDBD_Methyl-HT-SELEX_1 		0.643 0.754
TCF7L1
M05782_2.00 		Homo sapiens
ACATCGRGRCGCTGW
WCAGCGYCYCGATGT		 SELEX
Yin et al.(2017)
TCF7L1_eDBD_Methyl-HT-SELEX_2 		0.643 0.754
pop-1
M00712_2.00 		Caenorhabditis elegans
NNHDWVNNNN
NNNNBWHDNN		 PBM
Narasimhan et al.(2015)
pTH9135 		0.573 0.594
For this family, TFs with SR scores > 0.415 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
HmN_000448500 Sox 504 572

Links

Other Sox family TFs
Other Hymenolepis microstoma TFs

501 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
A1O1_02688 Capronia coronata A1O1_02688 N
A1O3_05266 Capronia epimyces A1O3_05266 N
A1O5_01442 Cladophialophora psammophila A1O5_01442 N
A1O7_08334 Cladophialophora yegresii A1O7_08334 N
A1O9_10004 Exophiala aquamarina A1O9_10004 N
ACRE_022770 Acremonium chrysogenum ACRE_022770 N
ARB_01700 Arthroderma benhamiae ARB_01700 N
AUEXF2481DRAFT_355500 Aureobasidium subglaciale AUEXF2481DRAFT_355500 N
BAUCODRAFT_72261 Baudoinia compniacensis BAUCODRAFT_72261 N
BBA_02591 Beauveria bassiana BBA_02591 N
Bcin03g01100 Botrytis cinerea Bcin03g01100 N
BDDG_02330 Blastomyces dermatitidis BDDG_02330 N
ACLA_016070 Aspergillus clavatus CADACLAG00000861 N
CADAFLAG00009101 Aspergillus flavus CADAFLAG00009101 N
AFUA_5G13080 Aspergillus fumigatus CADAFUAG00006036 N
CADAORAG00011561 Aspergillus oryzae CADAORAG00011561 N
NFIA_073950 Neosartorya fischeri CADNFIAG00007563 N
CCM_03094 Cordyceps militaris CCM_03094 N
CFIO01_11426 Colletotrichum fioriniae CFIO01_11426 N
CGGC5_6062 Colletotrichum gloeosporioides CGGC5_6062 N
CH063_05999 Colletotrichum higginsianum CH063_05999 N
CHGG_02432 Chaetomium globosum CHGG_02432 N
CIMG_09756 Coccidioides immitis CIMG_09756 N
CMQ_5876 Grosmannia clavigera CMQ_5876 N
Cob_11832 Colletotrichum orbiculare Cob_11832 N
CPC735_023090 Coccidioides posadasii CPC735_023090 N
CPUR_02213 Claviceps purpurea CPUR_02213 N
CSUB01_00157 Colletotrichum sublineola CSUB01_00157 N
CTHT_0029190 Chaetomium thermophilum CTHT_0029190 N
EPUS_05767 Endocarpon pusillum EPUS_05767 N
estExt_Genewise1.C_11835 Neurospora discreta estExt_Genewise1.C_11835 N
EURHEDRAFT_416038 Aspergillus ruber EURHEDRAFT_416038 N
e_gw1.00710.35.1 Aspergillus carbonarius e_gw1.00710.35.1 N
e_gw1.1.3574.1 Cryphonectria parasitica e_gw1.1.3574.1 N
F503_00183 Ophiostoma piceae uamh F503_00183 N
FFUJ_13348 Fusarium fujikuroi FFUJ_13348 N
FGRRES_20289 Fusarium graminearum FGRRES_20289 N
FOXG_07866 Fusarium oxysporum FOXG_07866 N
FPSE_00911 Fusarium pseudograminearum FPSE_00911 N
FVEG_04788 Fusarium verticillioides FVEG_04788 N
G647_07293 Cladophialophora carrionii G647_07293 N
GGTG_02625 Gaeumannomyces graminis GGTG_02625 N
GLRG_03112 Colletotrichum graminicola GLRG_03112 N
GMDG_07180 Pseudogymnoascus destructans GMDG_07180 N
GSTUM_00005836001 Tuber melanosporum GSTUM_00005836001 N
gw1.6.94.1 Nectria haematococca gw1.6.94.1 N
H101_00462 Trichophyton interdigitale H101_00462 N
H102_08872 Trichophyton rubrum H102_08872 N
H105_08898 Trichophyton soudanense H105_08898 N
HCBG_06294 Histoplasma capsulatum HCBG_06294 N
HMPREF1120_01100 Exophiala dermatitidis HMPREF1120_01100 N
HMPREF1541_03708 Cyphellophora europaea HMPREF1541_03708 N
HMPREF1624_04517 Sporothrix schenckii HMPREF1624_04517 N
M437DRAFT_47906 Aureobasidium melanogenum M437DRAFT_47906 N
M438DRAFT_346556 Aureobasidium pullulans M438DRAFT_346556 N
MAC_02105 Metarhizium acridum MAC_02105 N
MAJ_05489 Metarhizium majus MAJ_05489 N
MAM_02243 Metarhizium album MAM_02243 N
MANI_002092 Metarhizium anisopliae MANI_002092 N
MBM_07053 Marssonina brunnea MBM_07053 N
MBR_07319 Metarhizium brunneum MBR_07319 N
MGG_07458 Magnaporthe oryzae MGG_07458 N
MGU_05987 Metarhizium guizhouense MGU_05987 N
MPH_00903 Macrophomina phaseolina MPH_00903 N
MYCTH_2301100 Myceliophthora thermophila MYCTH_2301100 N
NCU09529 Neurospora crassa NCU09529 N
NechaG858 Fusarium solani NechaG858 N
NEUTE1DRAFT_75753 Neurospora tetrasperma NEUTE1DRAFT_75753 N
OCS_02045 Ophiocordyceps sinensis OCS_02045 N
OIDMADRAFT_49755 Oidiodendron maius OIDMADRAFT_49755 N
Pc21g08180 Penicillium chrysogenum Pc21g08180 N
PCH_Pc21g08180 Penicillium rubens PCH_Pc21g08180 N
PDE_07378 Penicillium oxalicum PDE_07378 N
PDIP_58830 Penicillium digitatum PDIP_58830 N
PEX1_060150 Penicillium expansum PEX1_060150 N
PITC_074210 Penicillium italicum PITC_074210 N
PMAA_036110 Talaromyces marneffei PMAA_036110 N
PMAA_036110 Penicillium marneffei PMAA_036110 N
PODANS_2_8520 Podospora anserina PODANS_2_8520 N
PV04_08874 Capronia semiimmersa PV04_08874 N
PV05_00754 Exophiala xenobiotica PV05_00754 N
PV06_05084 Exophiala oligosperma PV06_05084 N
PV07_00953 Cladophialophora immunda PV07_00953 N
PV09_02763 Verruconis gallopava PV09_02763 N
PV10_04998 Exophiala mesophila PV10_04998 N
PV11_02440 Exophiala sideris PV11_02440 N
PVAR5_1770 Byssochlamys spectabilis PVAR5_1770 N
S40285_01658 Stachybotrys chlorohalonata S40285_01658 N
S40288_00446 Stachybotrys chartarum S40288_00446 N
SAPIO_CDS8865 Scedosporium apiospermum SAPIO_CDS8865 N
SBOR_3507 Sclerotinia borealis SBOR_3507 N
SEPMUDRAFT_17793 Sphaerulina musiva SEPMUDRAFT_17793 N
SPBR_05600 Sporothrix brasiliensis SPBR_05600 N
SS1G_00787 Sclerotinia sclerotiorum SS1G_00787 N
TEQG_08764 Trichophyton equinum TEQG_08764 N
TESG_03160 Trichophyton tonsurans TESG_03160 N
THITE_2107310 Thielavia terrestris THITE_2107310 N
TRIATDRAFT_321925 Trichoderma atroviride TRIATDRAFT_321925 N
TRIREDRAFT_3449 Trichoderma reesei TRIREDRAFT_3449 N
TRIVIDRAFT_229241 Trichoderma virens TRIVIDRAFT_229241 N
TRV_03395 Trichophyton verrucosum TRV_03395 N
TSTA_056080 Talaromyces stipitatus TSTA_056080 N
U727_0043104031 Penicillium solitum U727_0043104031 N
UREG_04680 Uncinocarpus reesii UREG_04680 N
V499_01680 Pseudogymnoascus pannorum V499_01680 N
VHEMI00945 Torrubiella hemipterigena VHEMI00945 N
X797_006673 Metarhizium robertsii X797_006673 N
Z517_05121 Fonsecaea pedrosoi Z517_05121 N
Z518_05219 Rhinocladiella mackenziei Z518_05219 N
Z519_11826 Cladophialophora bantiana Z519_11826 N