tbx20 (Gasterosteus aculeatus)
T-box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00907 (T-box) IPR001699 ENSGACG00000012706 T339913_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Tbx20
M00835_2.00 		Mus musculus
NRRGTGTBAN
NTVACACYYN		 PBM
Weirauch et al.(2013)
pTH3777 		0.907 0.967
Tbx20
M09430_2.00 		Mus musculus
NDSTGNTGACAGSN
NSCTGTCANCASHN		 Misc
Kulakovskiy et al.(2013)
TBX20_MOUSE.H11MO.0.C 		0.907 0.967
Tbx20
M09650_2.00 		Mus musculus
SCTGTCADCASN
NSTGHTGACAGS		 Misc
Heinz et al.(2010)
Heart-Tbx20_GSE29636 		0.907 0.967
TBX20
M03565_2.00 		Homo sapiens
AGGTGTKARVGYGTGA
TCACRCBYTMACACCT		 SELEX
Jolma et al.(2013)
TBX20_1 		0.907 0.962
TBX20
M03566_2.00 		Homo sapiens
AGGTGTGAAWDTSACACBT
AVGTGTSAHWTTCACACCT		 SELEX
Jolma et al.(2013)
TBX20_2 		0.907 0.962
TBX20
M03567_2.00 		Homo sapiens
NNNDAGGTGTGAAND
HNTTCACACCTHNNN		 SELEX
Jolma et al.(2013)
TBX20_3 		0.907 0.962
TBX20
M03568_2.00 		Homo sapiens
DAGGTGTGAWR
YWTCACACCTH		 SELEX
Jolma et al.(2013)
TBX20_4 		0.907 0.962
TBX20
M03569_2.00 		Homo sapiens
AGGTGTKANGKTGTSA
TSACAMCNTMACACCT		 SELEX
Jolma et al.(2013)
TBX20_5 		0.907 0.962
TBX20
M05813_2.00 		Homo sapiens
DAGGTGTKARSGTGTGAA
TTCACACSYTMACACCTH		 SELEX
Yin et al.(2017)
TBX20_eDBD_HT-SELEX_1 		0.907 0.962
TBX20
M05814_2.00 		Homo sapiens
NAGGTGTGAAWTTCACACCTN
NAGGTGTGAAWTTCACACCTN		 SELEX
Yin et al.(2017)
TBX20_eDBD_HT-SELEX_2 		0.907 0.962
TBX20
M05817_2.00 		Homo sapiens
DRRGTGTBADVGYGTBAN
NTVACRCBHTVACACYYH		 SELEX
Yin et al.(2017)
TBX20_FL_HT-SELEX_1 		0.907 0.962
TBX20
M05818_2.00 		Homo sapiens
WTCACACYTAGGTGTKAM
KTMACACCTARGTGTGAW		 SELEX
Yin et al.(2017)
TBX20_FL_HT-SELEX_2 		0.907 0.962
TBX20
M11385_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$TBX20_05 		0.907 0.962
TBX20
M05815_2.00 		Homo sapiens
DAGGTGTKAASGYGTKAA
TTMACRCSTTMACACCTH		 SELEX
Yin et al.(2017)
TBX20_eDBD_Methyl-HT-SELEX_1 		0.907 0.962
TBX20
M05816_2.00 		Homo sapiens
DASGTGTGAWWWTCACACCTH
DAGGTGTGAWWWTCACACSTH		 SELEX
Yin et al.(2017)
TBX20_eDBD_Methyl-HT-SELEX_2 		0.907 0.962
TBX20
M05819_2.00 		Homo sapiens
DRGGYGTBARVGYGTKAN
NTMACRCBYTVACRCCYH		 SELEX
Yin et al.(2017)
TBX20_FL_Methyl-HT-SELEX_1 		0.907 0.962
TBX20
M05820_2.00 		Homo sapiens
TTMACRCCTAVGTGTGAA
TTCACACBTAGGYGTKAA		 SELEX
Yin et al.(2017)
TBX20_FL_Methyl-HT-SELEX_2 		0.907 0.962
mid
M03994_2.00 		Drosophila melanogaster
DAGGTGTKAN
NTMACACCTH		 SELEX
Nitta et al.(2015)
mid_1 		0.792 0.720
XP_001195863
M02498_2.00 		Strongylocentrotus purpuratus
AGGTGTBA
TVACACCT		 PBM
Weirauch et al.(2014)
pTH9340 		0.770 0.659
Tbx5
M00833_2.00 		Mus musculus
AGGTGTBA
TVACACCT		 PBM
Weirauch et al.(2013)
pTH3775 		0.744 0.604
TBX5
M03552_2.00 		Homo sapiens
AGGTGTBA
TVACACCT		 SELEX
Jolma et al.(2013)
TBX5_1 		0.744 0.604
TBX5
M03553_2.00 		Homo sapiens
AGGTGTKANWWNTVACACCT
AGGTGTBANWWNTMACACCT		 SELEX
Jolma et al.(2013)
TBX5_2 		0.744 0.604
Tbx5
M09649_2.00 		Mus musculus
AGGTGHBA
TVDCACCT		 Misc
Heinz et al.(2010)
HL1-Tbx5.biotin_GSE21529 		0.744 0.604
TBX5
M11374_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$TBX5_01 		0.744 0.604
TBX5
M11375_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$TBX5_02 		0.744 0.604
Tbx5
M11387_2.00 		Mus musculus Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$TBX5_05 		0.744 0.604
TBX5
M11376_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$TBX5_Q2 		0.744 0.604
TBX5
M11377_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$TBX5_Q5 		0.744 0.604
TBX18
M05797_2.00 		Homo sapiens
DDAGGTGTGARV
BYTCACACCTHH		 SELEX
Yin et al.(2017)
TBX18_eDBD_HT-SELEX 		0.742 0.648
TBX18
M11380_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$TBX18_01 		0.742 0.648
TBX18
M05798_2.00 		Homo sapiens
NDAGGYGTGAAN
NTTCACRCCTHN		 SELEX
Yin et al.(2017)
TBX18_eDBD_Methyl-HT-SELEX 		0.742 0.648
For this family, TFs with SR scores > 0.734 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSGACP00000016797 T-box 98 284

Links

Other T-box family TFs
Other Gasterosteus aculeatus TFs

276 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
27757.m000022 Ricinus communis 27757.m000022 I
29814.m000747 Ricinus communis 29814.m000747 I
AMTR_s00021p00013790 Amborella trichopoda AMTR_s00021p00013790 I
AT2G40260 Arabidopsis thaliana AT2G40260 D
Bo4g188940 Brassica oleracea Bo4g188940 I
Cagra.7053s0009 Capsella grandiflora Cagra.7053s0009 I
Carubv10023302m.g Capsella rubella Carubv10023302m.g I
cassava21831.m1 Manihot esculenta cassava21831.m1 I
cassava33845.m1 Manihot esculenta cassava33845.m1 I
cassava41268.m1 Manihot esculenta cassava41268.m1 I
Ciclev10015819m.g Citrus clementina Ciclev10015819m.g I
Ciclev10029989m.g Citrus clementina Ciclev10029989m.g I
estExt_fgenesh2_pg.C_1110034 Physcomitrella patens estExt_fgenesh2_pg.C_1110034 I
Eucgr.J00182 Eucalyptus grandis Eucgr.J00182 I
evm.TU.supercontig_19.148 Carica papaya evm.TU.supercontig_19.148 I
fgenesh1_pg.scaffold_2000161 Physcomitrella patens fgenesh1_pg.scaffold_2000161 I
fgenesh1_pg.scaffold_32000038 Physcomitrella patens fgenesh1_pg.scaffold_32000038 I
fgenesh1_pm.C_scaffold_4001775 Arabidopsis lyrata fgenesh1_pm.C_scaffold_4001775 I
Gorai.009G112300 Gossypium raimondii Gorai.009G112300 I
GRMZM2G333083 Zea mays GRMZM2G333083 I
GSMUA_Achr7G22410_001 Musa acuminata GSMUA_Achr7G22410_001 I
Lus10040945.g Linum usitatissimum Lus10040945.g I
MDP0000617021 Malus domestica MDP0000617021 I
OB12G10410 Oryza brachyantha OB12G10410 I
orange1.1g038268m.g Citrus sinensis orange1.1g038268m.g I
orange1.1g041956m.g Citrus sinensis orange1.1g041956m.g I
PK26523.1 Cannabis sativa PK26523.1 D
Pm018961 Prunus mume Pm018961 I
POPTR_0001s28690 Populus trichocarpa POPTR_0001s28690 I
POPTR_0008s07170 Populus trichocarpa POPTR_0008s07170 I
POPTR_0009s07890 Populus trichocarpa POPTR_0009s07890 I
POPTR_0010s19310 Populus trichocarpa POPTR_0010s19310 I
POPTR_0016s12940 Populus trichocarpa POPTR_0016s12940 I
PRUPE_ppa025397mg Prunus persica PRUPE_ppa025397mg I
SapurV1A.0042s0270 Salix purpurea SapurV1A.0042s0270 I
SapurV1A.0061s0540 Salix purpurea SapurV1A.0061s0540 I
SapurV1A.0650s0140 Salix purpurea SapurV1A.0650s0140 I
SapurV1A.0905s0010 Salix purpurea SapurV1A.0905s0010 I
SELMODRAFT_423935 Selaginella moellendorffii SELMODRAFT_423935 I
SELMODRAFT_424890 Selaginella moellendorffii SELMODRAFT_424890 I
TCM_042189 Theobroma cacao TCM_042189 I
TCM_042463 Theobroma cacao TCM_042463 I
Thhalv10016733m.g Eutrema salsugineum Thhalv10016733m.g I
VIT_06s0004g07000 Vitis vinifera VIT_06s0004g07000 I